Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65530 507 / 9e-178 Protein kinase superfamily protein (.1) AT5G10520 500 / 6e-175 RBK1 ROP binding protein kinases 1 (.1) AT5G18910 398 / 2e-134 Protein kinase superfamily protein (.1) AT5G35960 347 / 1e-115 Protein kinase family protein (.1) AT3G05140 347 / 3e-115 RBK2 ROP binding protein kinases 2 (.1) AT2G18890 320 / 2e-105 Protein kinase superfamily protein (.1.2) AT5G57670 308 / 1e-98 Protein kinase superfamily protein (.2) AT1G77280 267 / 9e-81 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 263 / 2e-79 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G52290 231 / 7e-70 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025713 [exp] 801 / 0 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1) Lus10012727 [exp] 557 / 0 AT5G65530 457 / 8e-157 Protein kinase superfamily protein (.1) Lus10034000 [exp] 386 / 2e-127 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10012776 [exp] 383 / 1e-126 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10018959 [exp] 341 / 3e-112 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10008192 [exp] 337 / 3e-111 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10019990 [exp] 326 / 7e-105 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2) Lus10006957 [exp] 312 / 4e-103 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10000968 [exp] 266 / 1e-80 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011700 [exp] 597 / 0 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.010G027301 [exp] 369 / 2e-122 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.013G028100 [exp] 366 / 3e-122 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.014G136300 [exp] 360 / 1e-120 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.018G096100 [exp] 330 / 6e-107 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G173700 [exp] 328 / 8e-106 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.018G091200 [exp] 315 / 2e-103 AT2G18890 469 / 8e-166 Protein kinase superfamily protein (.1.2) Potri.006G166600 [exp] 314 / 4e-103 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.002G077900 [exp] 273 / 3e-83 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G182800 [exp] 266 / 1e-80 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10035949 pacid=23141096 polypeptide=Lus10035949 locus=Lus10035949.g ID=Lus10035949.BGIv1.0 annot-version=v1.0 ATGGAAACCCCTCACCAACTTCATTCATTAATCATTACTAAAATAAAACTCTCTCCCTCGCTGCCCCTCCATCTCGGCGGGAAAATAGAGCAGCGGAGGA GGGAAGAGACAGGAGTTGCTGAAGAAGCTCAAGAAATCCCAATAATGGATAGTGATTTCATCCTGGATGATTCCTCCTGTGTTATGGAGGTTCCAATCTT AGGAGGTTCAGACCCTGATCATACTACCAGTTCCACAGGTTCCTGTAGCTTGTCAGAGAGTCTTCCGGCCCCAGATAGAGACATAGACAACACAGAAACA GAACTTGACGGCAACCAATGGAAATCCATGTTTGACACCATCAAAAAGAAATCAGCGAGGAGGTTCTCAGTCATCCCACTGCTCACAACCTACGAGGTTA TCTCCAAGAAGAATATAAGGAAGAAGCTGTCCAAGATTAGGAACCCTGGTGATGTTGTCATTGATTATGATGGCATCCCTGTTCCTAAACCCTCTTGGAG GAACTTTGATTTCAGGGAGCTTGCCGCAGCTACCGATGATTTCAGCTATGATAACTTGATCGGGAAAGGGGGTCATGCTGAAGTTTATAGAGGGCAGTTG TCGGATGGCCAAGTTGTAGCTGTAAAGAAGATTATAAAGGCTGAGAAGCAAGATGAAGACCTAATCGCTGATTTCTTGTCAGAGCTTGGAATAATTGCAC ATATAAACCACCCTAACGCGGCTAGACTTATAGGCTTCAGCATTGATTGTGGTTTGCATCTTGTGCTAGAGTTCCTACCACATGGAAGCCTTGCTAATAA GCTCCATGGCTCAGACGGGTTTCTAGACTGGGAGAAGAGGTACAAAGTCGCTTTAGGAACTGCAGAAGGTCTAAGGTATCTTCATCATGATTGCCCTAGA CGTATCATCCACCGTGATATAAAAGCATCAAACATCTTGCTTGGTGAAGATTACGAAGCTCAGATTTCTGATTTCGGATTGGCAAAGTGGCTCCCGGAGA ATTGGGTTCAACTCATTGTCTCCCCAATTGAAGGCACAATCGGATACCTGGCTCCGGAGTACTTCATGCACGGAGTGGTTGATGAAAAGACCGATGTATT TGCTTTTGGAGTTCTGTTACTGGAGCTCATAACCGGTCGCCATGCAGTTGATTCTACTAGGCAAAGCCTTGCCATGTGGGCAAAACCATTGTTGGAAGAA AACAAGGTGAGTACATTGGTGGATCCGAGATTAGGAAATGATTTCGATCCAATCGAGATGAAACGAGCAATGGTGACAGCATTTCTGTGCATCGACCATG TATCCAAAATGCGGCCTTCCATGACTCGGGTAGTGCAATTACTGAGCGGGGATGATGTGGCGATTGATATGGTGATGATACAGAAAACCAGTTCAGGGAG GGCAGTGATCTTGGATGCTAGTGACTTGCAAGACTACACGTGTACTAACTACCTTAACGACCTTAACCGCCATATGCAGCTTGTCATGGAATGA
AA sequence Show only first row Show all	>Lus10035949 pacid=23141096 polypeptide=Lus10035949 locus=Lus10035949.g ID=Lus10035949.BGIv1.0 annot-version=v1.0 METPHQLHSLIITKIKLSPSLPLHLGGKIEQRRREETGVAEEAQEIPIMDSDFILDDSSCVMEVPILGGSDPDHTTSSTGSCSLSESLPAPDRDIDNTET ELDGNQWKSMFDTIKKKSARRFSVIPLLTTYEVISKKNIRKKLSKIRNPGDVVIDYDGIPVPKPSWRNFDFRELAAATDDFSYDNLIGKGGHAEVYRGQL SDGQVVAVKKIIKAEKQDEDLIADFLSELGIIAHINHPNAARLIGFSIDCGLHLVLEFLPHGSLANKLHGSDGFLDWEKRYKVALGTAEGLRYLHHDCPR RIIHRDIKASNILLGEDYEAQISDFGLAKWLPENWVQLIVSPIEGTIGYLAPEYFMHGVVDEKTDVFAFGVLLLELITGRHAVDSTRQSLAMWAKPLLEE NKVSTLVDPRLGNDFDPIEMKRAMVTAFLCIDHVSKMRPSMTRVVQLLSGDDVAIDMVMIQKTSSGRAVILDASDLQDYTCTNYLNDLNRHMQLVME

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65530			Protein kinase superfamily pro...		Lus10035949 [exp]	0	1
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10037500 [exp]	2.8	0.8456
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10039948 [exp]	5.1	0.8450
AT1G05970			RNA-binding (RRM/RBD/RNP motif...		Lus10033646 [exp]	6.0	0.8166
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003075 [exp]	7.4	0.8172
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10037986 [exp]	8.8	0.8206
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Lus10024022 [exp]	12.4	0.8034
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10043335 [exp]	14.9	0.7650
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10022254 [exp]	17.7	0.8123
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Lus10000399 [exp]	17.9	0.7633
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Lus10027219 [exp]	21.0	0.8143

Compare expression of checked genes

Lus10035949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.