Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65540 489 / 4e-167 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025712 [exp] 891 / 0 AT5G65540 468 / 1e-159 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011800 [exp] 628 / 0 AT5G65540 534 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF07524 [flax] [poplar] Bromo_TP Bromodomain associated
Representative CDS sequence Show only first row Show all	>Lus10035950 pacid=23141170 polypeptide=Lus10035950 locus=Lus10035950.g ID=Lus10035950.BGIv1.0 annot-version=v1.0 ATGTCCATCCTTGGCGACGACGGTCGCGGCTTCGAGCTCGCCCGGAAACTTGAGTCCATCGGTGTGTGGCGGACATGGTTGGGCGACGCTCTGTACTCCA GTTTTGTTCAGTTCCTTTCTTCTCCTTCCTCCTGGGACTCTTTCATGCGAACCGACGAGCTCAAGTCCAAAGCTCAGATCCACCTCCAGCTCCGCACCCG TGCTCTTCTCTTCGACAAAGCTAGCGTCTCCCTTTTTCTCAAGTCCACTAACAATCCCTCCCCTTCCGCAGCGGTTTCCAAACTTAATCCCAATTATTTG CAGTTACATGGCGACGATGTGTATTACACTCTAGAGGACATGGATCAACGAAGAGATGGTGGTGGTGGAGGTGTTGGGACTACTGTGCCGTCATCTAGGA CTCATCCTAGATCTGCCTTTTCTACTGGAGCAAGATATGGTAGTGATCTGGATATGGATAATGTGTCACAAAAGTTCAGGAATGACGAGTTTCCGGAAAC ATGGTATAGCCAGTTTATTGGAAAGCATAAAAGTAACAGGCTATTTAAGATGCCCCTTGGGGATAGAGAGACAGAGAAACGTTCTCCTGAAATTATGTCT AATTATCTTAAGCTTCGGGACAAGCATAAAAGAAGCCGCGTTACGTTTAAACAAGAAAGCACACCAGGCTTGCATCCTGACTCTGGTTTAGATTGCCGAA GCTCAGTTGACGATGATGTGTCTTTCTTTCCTGAAGTAATGTTTACGTCAAATTGTGTACCAGATAGTGCATTACCTCCTATTGTTAGAGCCCAGGACAA CAACAAACTTGAGTTTCGTGGGGTTCTCGACTCATTGCCTCAGGCCAGGAATGCTGTAATGATAGAGAGGCTTGGCATCAGCGTGGAACAGGGAGAAAGC TTCCATCGTAGGAAAAGTGGGTCCGGCGGGAATATCAAAACTCTTAGTCAAGAACAGGCACTGCAGATGTCGAAAAAGGTCGTTGCCCATATGTTGAATC GAGTGGGTTTTGATAGTGCTTCAGAGGCTTCAGTGGAAGTCTTCTCTCAACTGTTTGAGTGTCATCTAAGTAAACTAGGTCACACATTGAGAGTTCTTGC TGACAGTTATCGGAAGCAGTGTTCAGCTATTGAGTTAATTAAGATGTTTCTTCAGACTGCGGGACACAGCAACGTTGGATCTTTAATGGAGGTCGTCAAG GAGGGCAGAAAGAATGTCATCCAACAAAGTCAGCAGCAAGCACACGGAATGCAGCCGCAAATGCAGACCCAACACCAAAATCCTCTTCGATTACCTCAGC AATTACAGATGGCAAGACAAACACATCCACAGATGCAACAGATGATGCATCCTCAAGGTTTGAGTTTCCATCAGCAGCAACAGTTGCGCAGACGGCAACA ACAACAGTCAGCCCCTCGCCCGAGTATGGACGCGGAGAAGGAAAGACATGCGGCAATGGTGCAAGTGAAGGTTGAAAGTGCACCAGATTTGCCATTGGAT AACAATGCATATAATAATGCCATGCACGGGAGACATCCACAGATGCCATTCCGGCAGCAACAACTTGCTGCAATGTCAAATCTGCATGCACAGTCCGGGA ATCAGCTTAGGCAGTTTGCTGCTTCATTACAAGTTCCTCAAGTGCAATCACCGAACATGGGTATGGTAAGGGCTCCTCCAGTAAAGGTTGAAGGTTTTCA GGAGTTGATGGGTGGGGATGGTACGTTGAAGCACGAGTCTGAAGATAGCACCAAGCTAACATCTCCTTCCAAGTAA
AA sequence Show only first row Show all	>Lus10035950 pacid=23141170 polypeptide=Lus10035950 locus=Lus10035950.g ID=Lus10035950.BGIv1.0 annot-version=v1.0 MSILGDDGRGFELARKLESIGVWRTWLGDALYSSFVQFLSSPSSWDSFMRTDELKSKAQIHLQLRTRALLFDKASVSLFLKSTNNPSPSAAVSKLNPNYL QLHGDDVYYTLEDMDQRRDGGGGGVGTTVPSSRTHPRSAFSTGARYGSDLDMDNVSQKFRNDEFPETWYSQFIGKHKSNRLFKMPLGDRETEKRSPEIMS NYLKLRDKHKRSRVTFKQESTPGLHPDSGLDCRSSVDDDVSFFPEVMFTSNCVPDSALPPIVRAQDNNKLEFRGVLDSLPQARNAVMIERLGISVEQGES FHRRKSGSGGNIKTLSQEQALQMSKKVVAHMLNRVGFDSASEASVEVFSQLFECHLSKLGHTLRVLADSYRKQCSAIELIKMFLQTAGHSNVGSLMEVVK EGRKNVIQQSQQQAHGMQPQMQTQHQNPLRLPQQLQMARQTHPQMQQMMHPQGLSFHQQQQLRRRQQQQSAPRPSMDAEKERHAAMVQVKVESAPDLPLD NNAYNNAMHGRHPQMPFRQQQLAAMSNLHAQSGNQLRQFAASLQVPQVQSPNMGMVRAPPVKVEGFQELMGGDGTLKHESEDSTKLTSPSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65540			unknown protein		Lus10035950 [exp]	0	1
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10019024 [exp]	3.2	0.8431
AT3G15120			P-loop containing nucleoside t...		Lus10017935 [exp]	4.2	0.7948
AT4G16100			Protein of unknown function (D...		Lus10037716 [exp]	5.0	0.7246
AT5G44090			Calcium-binding EF-hand family...		Lus10024917 [exp]	11.5	0.7294
AT1G56560		A/N-InvA	alkaline/neutral invertase A, ...		Lus10010900 [exp]	11.9	0.6871
AT1G56290			CwfJ-like family protein (.1)		Lus10022209 [exp]	13.4	0.7968
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10003795 [exp]	15.2	0.7789
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	17.1	0.7644
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10025351 [exp]	20.8	0.7333
AT4G00830		LIF2	LHP1-Interacting Factor 2, RNA...		Lus10030207 [exp]	21.9	0.7170

Compare expression of checked genes

Lus10035950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.