Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38020 372 / 1e-128 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025709 [exp] 523 / 0 AT4G38020 337 / 2e-115 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G147600 [exp] 383 / 6e-133 AT4G38020 335 / 5e-114 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0098 [flax] [poplar] SPOUT PF00588 [flax] [poplar] SpoU_methylase SpoU rRNA Methylase family
Representative CDS sequence Show only first row Show all	>Lus10035953 pacid=23141123 polypeptide=Lus10035953 locus=Lus10035953.g ID=Lus10035953.BGIv1.0 annot-version=v1.0 ATGCAGAGCGCGTACACCTCTTGGACGCCGCCTGTTTGCTCTTCTCCATCTCTCAAACTCTCTATTGCAAAGGTCAAGCTAGCCACTGTCCATAGAAATT CAAATTACTCCAATGACAAAGATGACGGCGACGGTAGCGATACTTTTACCAGCGACGATTTACCGACCGTTGGGAATTTCACACTACCAGCTCATGTGAA GTCAATTACTAGCACTTCAAACCCATTTGTGAGGCACTGTGTCAAGCTCAGTCGCAGCTCCCCTTATCGCCATTCCCATGGGTCGACTCTAGTCGTCGGC AGTACCCCTATCAGGGAGATTTGCAAGTTTCAAGAATCGCTGCGGGAAAGGACCTCCGAAATGGATTATTTATTCCTTCTTGATAAGGTCGATGTTCCCG CTGGTCTCGAAAGTTACCCTGCTCGTACACTGCGCGTGAGCGCTTTGGTGATGAAAAAGCTTTCACAAGTGCAATCCACGGAATCCATTGAAGCAATTGC TTTGATGAAATTTCCTACCAGCTACTTTATCGCAGATGATGATCTAAGTTGTCGGAAGTGGTTCTCATCTCCCCATCGCATACTTGTTCTTGAAGGGATT CAGGCAGGTAACTTAGGGACGTTACTCAGGTCAGCTGTGGCCTTTAAATGGGGTGGCATTTTCCTGCTTCCCGGCTGTTGCGATCCATTCAATGGGAAAG CACTCCGAGCTAGCCGGGGAGCCTCGTTCCAGGTTCCTATAGTTTCTGGTAGCTGGAAACATCTGCAAGCCCTGGTAAAGGAATTCAATATGAAACTGTT AGCGGGCCACCCAGATACAGATGATGGATCAAGATCAGTATCGCGTCTATCTCCAGGATTTGTAGATGCACTGGCTGATGTCCCGCTGTGTTTGGTTTTG GGGAACGAGGCACATGGCCTTACTGAAGAATCTCAACAAGCATGTGAGCTCGTGAGCATACCGATGGCAAAAGACTTCGAGTCCCTCAATGTTGCAGTTG CAGGTGGTATATTTCTCTACATGCTGCGACCCTGA
AA sequence Show only first row Show all	>Lus10035953 pacid=23141123 polypeptide=Lus10035953 locus=Lus10035953.g ID=Lus10035953.BGIv1.0 annot-version=v1.0 MQSAYTSWTPPVCSSPSLKLSIAKVKLATVHRNSNYSNDKDDGDGSDTFTSDDLPTVGNFTLPAHVKSITSTSNPFVRHCVKLSRSSPYRHSHGSTLVVG STPIREICKFQESLRERTSEMDYLFLLDKVDVPAGLESYPARTLRVSALVMKKLSQVQSTESIEAIALMKFPTSYFIADDDLSCRKWFSSPHRILVLEGI QAGNLGTLLRSAVAFKWGGIFLLPGCCDPFNGKALRASRGASFQVPIVSGSWKHLQALVKEFNMKLLAGHPDTDDGSRSVSRLSPGFVDALADVPLCLVL GNEAHGLTEESQQACELVSIPMAKDFESLNVAVAGGIFLYMLRP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38020			tRNA/rRNA methyltransferase (S...		Lus10035953 [exp]	0	1
AT3G05510			Phospholipid/glycerol acyltran...		Lus10029891 [exp]	1.4	0.9570
AT4G33680		AGD2	ABERRANT GROWTH AND DEATH 2, P...		Lus10010748 [exp]	3.5	0.9092
AT1G48570			zinc finger (Ran-binding) fami...		Lus10009049 [exp]	3.7	0.9078
AT1G30680			toprim domain-containing prote...		Lus10023379 [exp]	4.9	0.9229
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10009392 [exp]	5.7	0.9348
AT5G22640		EMB1211	embryo defective 1211, MORN (M...		Lus10020545 [exp]	5.8	0.9382
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10017191 [exp]	6.6	0.9337
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10033809 [exp]	6.8	0.8969
AT1G06190			Rho termination factor (.1.2)		Lus10024898 [exp]	7.0	0.9206
AT4G17040		HON5, CLPR4	happy on norflurazon 5, CLP pr...		Lus10011014 [exp]	7.1	0.9147

Compare expression of checked genes

Lus10035953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.