Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65590 154 / 4e-44 DOF AtDof5,7 Dof-type zinc finger DNA-binding family protein (.1) AT1G51700 105 / 4e-27 DOF ADOF1, AtDof1. 7 DOF zinc finger protein 1 (.1) AT3G21270 105 / 1e-26 DOF ADOF2, AtDof3. 1 DOF zinc finger protein 2 (.1) AT4G38000 102 / 4e-25 DOF AtDof4,7 DNA binding with one finger 4.7 (.1) AT2G37590 102 / 2e-24 DOF AtDof2. 4, ATDOF2.4 DNA binding with one finger 2.4 (.1) AT2G28810 102 / 2e-24 DOF AtDof2. 2 Dof-type zinc finger DNA-binding family protein (.1.2) AT1G07640 100 / 2e-24 DOF OBP2, AtDof1. 1 Dof-type zinc finger DNA-binding family protein (.1.2.3) AT5G60200 100 / 3e-24 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) AT1G28310 100 / 4e-24 DOF AtDof1. 4 Dof-type zinc finger DNA-binding family protein (.1.2) AT3G45610 99 / 4e-24 DOF DOF6, AtDof3,2 DOF transcription factor 6, Dof-type zinc finger DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025707 [exp] 357 / 1e-122 AT5G65590 192 / 7e-59 Dof-type zinc finger DNA-binding family protein (.1) Lus10042114 [exp] 98 / 5e-25 AT5G62940 149 / 7e-45 HIGH CAMBIAL ACTIVITY2, DNA BINDING WITH ONE FINGER 5.6, Dof-type zinc finger DNA-binding family protein (.1) Lus10025340 [exp] 103 / 2e-24 AT2G37590 182 / 4e-54 DNA binding with one finger 2.4 (.1) Lus10022373 [exp] 100 / 2e-24 AT5G60200 116 / 7e-32 TARGET OF MONOPTEROS 6 (.1) Lus10014002 [exp] 99 / 2e-24 AT5G60200 124 / 7e-35 TARGET OF MONOPTEROS 6 (.1) Lus10007774 [exp] 100 / 4e-24 AT5G60200 124 / 6e-34 TARGET OF MONOPTEROS 6 (.1) Lus10015425 [exp] 100 / 6e-24 AT5G60200 129 / 8e-36 TARGET OF MONOPTEROS 6 (.1) Lus10016566 [exp] 100 / 8e-24 AT3G55370 160 / 2e-46 OBF-binding protein 3 (.1.2.3) Lus10014001 [exp] 99 / 8e-24 AT5G60200 128 / 1e-35 TARGET OF MONOPTEROS 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G149100 [exp] 107 / 3e-26 AT5G65590 197 / 1e-60 Dof-type zinc finger DNA-binding family protein (.1) Potri.007G058200 [exp] 104 / 3e-25 AT5G65590 192 / 1e-58 Dof-type zinc finger DNA-binding family protein (.1) Potri.005G134200 [exp] 103 / 4e-25 AT5G60200 124 / 2e-33 TARGET OF MONOPTEROS 6 (.1) Potri.008G055100 [exp] 103 / 4e-25 AT3G55370 146 / 7e-41 OBF-binding protein 3 (.1.2.3) Potri.007G038100 [exp] 103 / 5e-25 AT5G60200 122 / 5e-33 TARGET OF MONOPTEROS 6 (.1) Potri.009G029500 [exp] 103 / 6e-25 AT5G02460 154 / 1e-43 Dof-type zinc finger DNA-binding family protein (.1) Potri.003G034200 [exp] 100 / 9e-25 AT1G51700 136 / 7e-40 DOF zinc finger protein 1 (.1) Potri.015G048300 [exp] 102 / 1e-24 AT5G60850 152 / 1e-43 OBF binding protein 4 (.1) Potri.001G238400 [exp] 102 / 1e-24 AT3G55370 160 / 9e-47 OBF-binding protein 3 (.1.2.3) Potri.011G055600 [exp] 102 / 3e-24 AT1G28310 140 / 1e-38 Dof-type zinc finger DNA-binding family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02701 [flax] [poplar] zf-Dof Dof domain, zinc finger
Representative CDS sequence Show only first row Show all	>Lus10035955 pacid=23141218 polypeptide=Lus10035955 locus=Lus10035955.g ID=Lus10035955.BGIv1.0 annot-version=v1.0 ATGTCTGGAATCCATCTTCATCATCATCAGCAGCAGCAGCAGCAGAACGAAAAGGAAGTCAAAGTGAACAAAGCAGCAGCATCATCATCTTCATCTACAG CAGCAGCAGCAGCTGATGAGGGTGTGGTAATAATTAAGTGCCCTAGATGTGATTCCCCCAACACAAAATTCTGCTACTACAACAACTACAGCCTCAGCCA GCCCCGCCACTTCTGCAAGACTTGCCGACGCTACTGGACCAAAGGAGGCGCCCTCCGTAACGTCCCCGTCGGTGGTGGCTGCCGCAAGTCCAAGAAACTC AAGTCCTCTTCTTCTTACTCCTCCTCTTCCTCCGCATCAGCTGCAGCTGGTGCTACTTCTTCTTCCTCCTCCGATATTTCCGGGTTCAAATTCTTCTCCC CACCACCTACTAATAATACTATGGACTTCAACGTCAAAGGCCTGTCCTTAATGTCACCTCCCGGCCCCTCCACTTACAATAGCCATCATCATAATAATCA TCCTTTCGGGATGGATCTTTCAGTTTCATCCCTGGAGCCGCCGTATGGAATGGGTGGTTCCATGAACGTGAACACGAGCCTGGCGTCTTCGATAGAGTCG CTGAGCTGTATGAACCAGGATCTGCACTGGAAACTGCAGCAGCAGAGATTAGGATTAATGCTCAAAGAAGATGGTACTGCAGGCGGGGTAGTGGAGGCGG AGAAGGCGCCCCTGCAGCCGATACTGTTCAGGGAGCTTAATATTAATAACACAAGCAGGCAGCAGCAGCAACATCATCAACAAGGTAGGGCCGGAGCCGG AGGAGGAGATCATCATGAGACGGAGTGGTTCTTCGGGAACTCATCATACGTTCAACAAGTTACTAGTGCTGCTGCTGCTGATCATCATCAAGCCGCTGCT GCTCCAAGCAATAATAACAAGAGTGTTAATACTAATGCGAATGACGAGATTCAACAGCAACATCATCAGATTGAGACAAATTGGAATGTGAAGGGGCAGC AGCAGCAGGTTCATGCTTGGGGTGATTTGCATCCATACAACCACTAG
AA sequence Show only first row Show all	>Lus10035955 pacid=23141218 polypeptide=Lus10035955 locus=Lus10035955.g ID=Lus10035955.BGIv1.0 annot-version=v1.0 MSGIHLHHHQQQQQQNEKEVKVNKAAASSSSSTAAAAADEGVVIIKCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPVGGGCRKSKKL KSSSSYSSSSSASAAAGATSSSSSDISGFKFFSPPPTNNTMDFNVKGLSLMSPPGPSTYNSHHHNNHPFGMDLSVSSLEPPYGMGGSMNVNTSLASSIES LSCMNQDLHWKLQQQRLGLMLKEDGTAGGVVEAEKAPLQPILFRELNINNTSRQQQQHHQQGRAGAGGGDHHETEWFFGNSSYVQQVTSAAAADHHQAAA APSNNNKSVNTNANDEIQQQHHQIETNWNVKGQQQQVHAWGDLHPYNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65590	DOF	AtDof5,7	Dof-type zinc finger DNA-bindi...		Lus10035955 [exp]	0	1
AT5G65590	DOF	AtDof5,7	Dof-type zinc finger DNA-bindi...		Lus10025707 [exp]	1.0	0.9522
AT4G31380		FLP1	FPF1-like protein 1 (.1)		Lus10040802 [exp]	7.3	0.9227
AT2G28490			RmlC-like cupins superfamily p...		Lus10011364 [exp]	7.6	0.9378
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10024499 [exp]	9.4	0.8482
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039362 [exp]	10.1	0.9323
AT3G26660	AS2	LBD24	LOB domain-containing protein ...		Lus10009567 [exp]	10.4	0.9336
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10039736 [exp]	10.8	0.9366
AT1G48130		ATPER1	1-cysteine peroxiredoxin 1 (.1...		Lus10017112 [exp]	13.5	0.8667
AT1G51460		ABCG13	ATP-binding cassette G13, ABC-...		Lus10000339 [exp]	13.6	0.9330
AT3G06470			GNS1/SUR4 membrane protein fam...		Lus10012685 [exp]	14.9	0.9087

Compare expression of checked genes

Lus10035955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.