Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37990 501 / 2e-179 CAD-B2, ATCAD8, ELI3-2 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) AT4G37980 494 / 1e-176 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT4G37970 475 / 7e-169 ATCAD6 cinnamyl alcohol dehydrogenase 6 (.1) AT4G39330 464 / 1e-164 AtCAD1, ATCAD9 cinnamyl alcohol dehydrogenase 9 (.1.2) AT2G21890 440 / 5e-155 CAD3, ATCAD3 cinnamyl alcohol dehydrogenase homolog 3 (.1) AT2G21730 439 / 2e-154 CAD2, ATCAD2 cinnamyl alcohol dehydrogenase homolog 2 (.1) AT3G19450 324 / 2e-109 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT1G72680 308 / 2e-103 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) AT4G34230 303 / 2e-101 CAD-5, ATCAD5, CAD-D, CAD6 cinnamyl alcohol dehydrogenase 5 (.1.2) AT5G63620 80 / 3e-16 GroES-like zinc-binding alcohol dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025706 [exp] 682 / 0 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10023268 [exp] 527 / 0 AT4G37980 471 / 1e-167 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Lus10002089 [exp] 465 / 5e-165 AT4G39330 577 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10017285 [exp] 398 / 1e-138 AT4G39330 413 / 1e-144 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10005611 [exp] 397 / 4e-138 AT4G39330 409 / 9e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10003854 [exp] 384 / 1e-133 AT4G39330 486 / 2e-174 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10038536 [exp] 380 / 2e-132 AT4G37990 341 / 6e-117 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10000143 [exp] 367 / 2e-127 AT4G39330 463 / 3e-165 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10014104 [exp] 354 / 3e-121 AT3G19450 530 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G063400 [exp] 558 / 0 AT4G37980 490 / 1e-174 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.016G065300 [exp] 558 / 0 AT4G37990 492 / 1e-175 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.001G268600 [exp] 553 / 0 AT4G37980 480 / 7e-171 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.006G199100 [exp] 547 / 0 AT4G37980 506 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Potri.016G078300 [exp] 546 / 0 AT4G37970 482 / 2e-171 cinnamyl alcohol dehydrogenase 6 (.1) Potri.001G307200 [exp] 489 / 2e-174 AT4G39330 572 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.001G372400 [exp] 429 / 2e-150 AT4G39330 439 / 2e-154 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.009G063300 [exp] 386 / 1e-135 AT4G37990 283 / 2e-95 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Potri.002G018300 [exp] 389 / 6e-135 AT4G39330 409 / 5e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.006G024300 [exp] 327 / 1e-110 AT1G72680 521 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0296 [flax] [poplar] GroES PF08240 [flax] [poplar] ADH_N Alcohol dehydrogenase GroES-like domain CL0063 [flax] [poplar] NADP_Rossmann PF00107 [flax] [poplar] ADH_zinc_N Zinc-binding dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10035956 pacid=23141243 polypeptide=Lus10035956 locus=Lus10035956.g ID=Lus10035956.BGIv1.0 annot-version=v1.0 ATGGCAGAGAAACAACATCCGGTGCCGGCCTACGGTTTGGCTGCCAGAGACCATTCTGGGCTTCTTTCTCCTTTCAACTTCTCCAGAAGAGAAACAGGGG AAACCGATGTCAAATTTAAGGTTCTCTACTGTGGGATTTGCCATTCCGATCTTCACATGCTCAAGAATGAATGGGGCTCCTCCACCTATCCCATTGTCCC TGGGCATGAGATAGTGGGGCAAGTGACAGAGGTTGGAAGCAAAGTGGAGAAATACAAAGTTGGAGACAGAGTAGGCGTTGGATGCATGGTTGGGTCGTGC CGCTCTTGCACCAACTGCTCCCAAAGCATCGAAAATTACTGCCCCAAGATGATCCTAACCTACGGAGGAACCTACCATGATGGCACCCCTACCTACGGAG GCTACTCCGACGTCATGGTCTGCGACGAGCATTTCGTGGTCCGAGTCCCCGACTCCCTGCCCTTAGACGTTGCCGCACCTCTGCTCTGCGCTGGTATCAC GCTTTACAGCCCTTTGAAGTTCTATGGGCTAGACAAGCCAGGACTCCACATCGGTATTGTCGGGCTCGGTGGACTGGGCCACGTGGGTGTCAAGTTTGCC AAAGCCATGGGTCTGAAAGTCACTGTGATTAGTACCTCCCCTGGCAAGAAGCAGGAGGCAATAGAGCGACATGGTGCTGATGCCTTCTTGGTGAGCCGTG ACCAGGAACAAATGCAGGCTGCAATGGGGACGATGGATGGTATTATTGACACTGTATCAGCTGTACACCCAATAATGCCATTGATTGGGCTGTTGAAGAC ACAAGGCAAGTTGGTGCTGGTTGGTGCTCCAGAGAAGCCCCTTGAGTTGCCAGTTTTCCCTCTGCTCATGGGAAGGAAGATAGTAGGAGGGAGTTGCATT GGAGGAATGAAGGAGACGCAAGAGATGCTTGATTTCGCAGCAAAGCACAACATCACTGCGGACATTGAGGTTATATCAGCAGACTATGTGAACACTGCAA TGGAGAGGCTTGCCAAGAATGATGTTAAGTACAGATTCGTCATCGATGTTGCCAATACTATGCAAGCTCCTTAA
AA sequence Show only first row Show all	>Lus10035956 pacid=23141243 polypeptide=Lus10035956 locus=Lus10035956.g ID=Lus10035956.BGIv1.0 annot-version=v1.0 MAEKQHPVPAYGLAARDHSGLLSPFNFSRRETGETDVKFKVLYCGICHSDLHMLKNEWGSSTYPIVPGHEIVGQVTEVGSKVEKYKVGDRVGVGCMVGSC RSCTNCSQSIENYCPKMILTYGGTYHDGTPTYGGYSDVMVCDEHFVVRVPDSLPLDVAAPLLCAGITLYSPLKFYGLDKPGLHIGIVGLGGLGHVGVKFA KAMGLKVTVISTSPGKKQEAIERHGADAFLVSRDQEQMQAAMGTMDGIIDTVSAVHPIMPLIGLLKTQGKLVLVGAPEKPLELPVFPLLMGRKIVGGSCI GGMKETQEMLDFAAKHNITADIEVISADYVNTAMERLAKNDVKYRFVIDVANTMQAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37990		CAD-B2, ATCAD8,...	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10035956 [exp]	0	1
AT5G25930			Protein kinase family protein ...		Lus10034978 [exp]	1.4	0.9456
AT5G45020			Glutathione S-transferase fami...		Lus10026012 [exp]	11.4	0.9406
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10022756 [exp]	12.4	0.9451
AT5G12340			unknown protein		Lus10036031 [exp]	18.0	0.9390
AT3G52710			unknown protein		Lus10017030 [exp]	21.4	0.9357
					Lus10027919 [exp]	23.2	0.9436
AT3G52450		PUB22	plant U-box 22 (.1)		Lus10029393 [exp]	24.6	0.9421
AT2G23770			protein kinase family protein ...		Lus10018788 [exp]	28.1	0.9379
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10025989 [exp]	28.5	0.9353
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10041951 [exp]	28.8	0.9284

Compare expression of checked genes

Lus10035956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.