Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14650 662 / 0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) AT1G14640 568 / 0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT5G06520 128 / 2e-30 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT5G12280 112 / 2e-26 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.2) AT4G16200 107 / 2e-25 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT3G49130 80 / 5e-16 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1) AT5G06890 64 / 1e-12 Ubiquitin-like superfamily protein (.1) AT2G43960 64 / 2e-10 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1) AT1G18050 62 / 4e-10 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1) AT3G27600 62 / 5e-10 SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007278 [exp] 618 / 0 AT1G14650 512 / 3e-174 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10025704 [exp] 547 / 0 AT1G14650 346 / 4e-114 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10013966 [exp] 384 / 7e-123 AT1G14650 672 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10025705 [exp] 234 / 7e-70 AT1G14650 365 / 5e-120 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10015391 [exp] 179 / 9e-53 AT1G14650 119 / 4e-32 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Lus10032646 [exp] 60 / 9e-09 AT5G55100 499 / 3e-164 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Lus10043105 [exp] 59 / 1e-08 AT5G55100 504 / 1e-165 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Lus10015703 [exp] 47 / 7e-05 AT3G52120 477 / 2e-166 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G070700 [exp] 815 / 0 AT1G14650 810 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Potri.005G094600 [exp] 801 / 0 AT1G14650 814 / 0.0 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein (.2) Potri.001G356800 [exp] 58 / 2e-08 AT5G55100 420 / 6e-133 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein (.2) Potri.001G269900 [exp] 48 / 2e-05 AT3G52120 500 / 3e-176 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Potri.009G064600 [exp] 47 / 3e-05 AT3G52120 509 / 1e-179 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family CL0072 [flax] [poplar] PF12230 [flax] [poplar] PRP21_like_P Pre-mRNA splicing factor PRP21 like protein CL0072 [flax] [poplar] PF01805 [flax] [poplar] Surp Surp module
Representative CDS sequence Show only first row Show all	>Lus10035958 pacid=23140972 polypeptide=Lus10035958 locus=Lus10035958.g ID=Lus10035958.BGIv1.0 annot-version=v1.0 ATGCCAGGCACAGCAATTTTGACTCTGCCAGCACCTCCTCCGCACTCAGAAGGGTCTCCTCCTCCCCCATCCCAACTGTCAGAACATAATTCAAATGAAG AAACCCCAGTGAATGAGGAACATAATAGAGCTCCGGTTGCTACCCACACCAGAACCATTGGAATTATTCATCCTCCTCCAGATATCAGGAATATTGTTGA CAAGACAGCGCAGTTTGTTGCCAAAAATGGACCCGAGTTTGAGAAAAGGATTATGGCTCATAATGCCAACAATGCTAAATTCAACTTTTTGAATCCCAAC GATCCATATCATGCATATTATCAACATCGTTTGTCCGAGTCTCGCACCCAGAATCTGTCTGCTACACAGCAGCCTATCTCTGAGCTGCCAGATTCTGCTG CCCCTGAGTCTATTCCATCTGCTGCTGATGATGATGGAACCGAAGCAGCTCCAAAGCCTGACACTGCTGCCCAATTTAGACTACCAACTCGCAAGGTTCT TGAACCACCTGAAGCTGAGCAGTATACAGTTCGGCTTCCTGAAGGGATTACTGGAGAAGAACTTGATATTATTAAGCTGACTGCACAGTTTGTAGCGCGC AATGGGCAAACATTCCTTACTGGCCTCACTAATAGGGAGATGAACAACCCCCAGTTCCACTTTATGAAGCCAACCCACAGCATGTTTACTTTCTTCACAG GCCTTGCAGATGCCTATTCAAAAGTCCTGATGCCTCCAAAAGGTTTAACAGAGAAGTTGGCGAACAGTGTTGCTGACATGACCACTGTGCTTGAGAGATG TTTGCATCGTCTAGAGTGGGAGCGGTCACAGGAGCAAGCTAGACAGAAGGCCGAGGATGAGATTGAACAGGAGCGATTGCAAATGGCCATGATTGACTGG CATGATTTTGTTGTTGTGGAGACCATAGACTTTGCAGATGATGAAGACGATGAGTTGCCTGTTCCGATGACTCTTGAGGAGGTCATAAGGAGAAGCAAGG TAACGGCTATGGAGGAAGAAGAAATTGTTGAACTTGGGAAGGAGGTTGAGATGGAAATGGATGAAGAGGAGGTGAAGCTTGTTGAAGAAGGCATGAGGGC AGCACATATTGATGAGAATGATGATGAGAAGAATGTTTTTAACGCTAATGATGAACCTGAACAACCAATTAGAATTGTGAAGAACTGGAAGAGACCTGAG GATAGGCTGCCAGCTGAAAGAGATCCTACCAAGTTTGTTGTTTCCCCAATTACTGGTGAGCTGATTCCTATTAACGAGATGTCAGAACACATGAGGATCT CCCTAATTGATCCCAAGTACAAGGAGCAAAAGGAGAGGATGTTTGCTAAGATTCGGGAGACCACGCTTGCTGCCGATGATGAAATTTCGAAAAACATTGT GGGCCTTGCACGAACCCGTCCTGATATTTTTGGCACAACAGAGGAGGAGGTGTCTAATGCCGTTCAGGCTGAAATTGAGAAAAGGAAAGATGAGCAACCA AAGCAGGTTATATGGGATGGCCACACTGGAAGCATTGGGCGCACTGCTAATCAGGCAATGTCCCAAAGTCTTGGTGACGATCAAAATGAGGCTATGAACA GTGATGGACGAAACTTACCTGGACCAGCTGCTCCTCCTCCTCGTCCTGGTGTACCATCACTTCGACCGCTTCCTCCACCGCCTGGACTGGCTCTTAATGT TCCCCGCATGCCTCCAAATGCAGTCTCATATTCAACTTCTATGGGTGGTGGATATCCTGTACCTCTGCCAAGGCCACCGGGTATGCCAATGATGCCATCA ATTCGTCCACCTCCTCCTCCAATGCCAGGACAGCACCCGATGATGATGAATCAACCTTCTTCTATGAACCCTCCAAACATGCCAGTACCACCTCCACCAG GGTCTCAGTTTGCTCCCATGCCAATGCACCGCCCTTTTGCCCCTCTGCCTATGCCTCCACCACACATGCATGCTATGGCCCCTCCTCCACCCTTACCTCA GGGAGTGCCTCCACCACCACCTCCTGAGGATACTCCTCCACTTCCAGAAGAACCTGAGCCGAAGAGGCAGAAGCTAGATGATTCAATGCTTATTCCAGAA GAGCAGTTTTTGGCCCAGCATCCGGGACCTGCAAGCATCAATGTAACTGTTCCTAGTGTCGATGAAGGAAATCTAAGAGGTCAAGTGCTGGAGATTAGAG TGCAATCCTTATCAGAAACAATTCTCAGTCTGAAGGAGAAGATTGCTGGAGAGTTACAACTTGCTTCCAACAAGCAGAAATTAAGTCAAAAGGCTCGTTT TCTAAAGGATAATATGAGCCTTGCTTACTACAATGTCCGCGGTGGAGATTCACTTACTCTGACGTTGAGAGAGCGTGGTGGGAAAAAGAAATAA
AA sequence Show only first row Show all	>Lus10035958 pacid=23140972 polypeptide=Lus10035958 locus=Lus10035958.g ID=Lus10035958.BGIv1.0 annot-version=v1.0 MPGTAILTLPAPPPHSEGSPPPPSQLSEHNSNEETPVNEEHNRAPVATHTRTIGIIHPPPDIRNIVDKTAQFVAKNGPEFEKRIMAHNANNAKFNFLNPN DPYHAYYQHRLSESRTQNLSATQQPISELPDSAAPESIPSAADDDGTEAAPKPDTAAQFRLPTRKVLEPPEAEQYTVRLPEGITGEELDIIKLTAQFVAR NGQTFLTGLTNREMNNPQFHFMKPTHSMFTFFTGLADAYSKVLMPPKGLTEKLANSVADMTTVLERCLHRLEWERSQEQARQKAEDEIEQERLQMAMIDW HDFVVVETIDFADDEDDELPVPMTLEEVIRRSKVTAMEEEEIVELGKEVEMEMDEEEVKLVEEGMRAAHIDENDDEKNVFNANDEPEQPIRIVKNWKRPE DRLPAERDPTKFVVSPITGELIPINEMSEHMRISLIDPKYKEQKERMFAKIRETTLAADDEISKNIVGLARTRPDIFGTTEEEVSNAVQAEIEKRKDEQP KQVIWDGHTGSIGRTANQAMSQSLGDDQNEAMNSDGRNLPGPAAPPPRPGVPSLRPLPPPPGLALNVPRMPPNAVSYSTSMGGGYPVPLPRPPGMPMMPS IRPPPPPMPGQHPMMMNQPSSMNPPNMPVPPPPGSQFAPMPMHRPFAPLPMPPPHMHAMAPPPPLPQGVPPPPPPEDTPPLPEEPEPKRQKLDDSMLIPE EQFLAQHPGPASINVTVPSVDEGNLRGQVLEIRVQSLSETILSLKEKIAGELQLASNKQKLSQKARFLKDNMSLAYYNVRGGDSLTLTLRERGGKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10035958 [exp]	0	1
AT5G44180	HD		Homeodomain-like transcription...		Lus10039870 [exp]	2.4	0.8879
AT3G32940			RNA-binding KH domain-containi...		Lus10013751 [exp]	2.6	0.8575
AT5G41580			RING/U-box superfamily protein...		Lus10024682 [exp]	3.2	0.8694
AT2G33835	C3HZnF	FES1	FRIGIDA-ESSENTIAL 1, Zinc fing...		Lus10025447 [exp]	3.5	0.8789
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10043225 [exp]	4.0	0.8403
AT3G58560			DNAse I-like superfamily prote...		Lus10012293 [exp]	4.5	0.8723
AT2G17030			F-box family protein with a do...		Lus10022650 [exp]	5.4	0.8253
AT3G27260		GTE8	global transcription factor gr...		Lus10032076 [exp]	11.8	0.8173
AT5G54930			AT hook motif-containing prote...		Lus10016478 [exp]	13.4	0.8354
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10006095 [exp]	13.9	0.8631

Compare expression of checked genes

Lus10035958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.