Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63710 205 / 3e-60 Leucine-rich repeat protein kinase family protein (.1) AT5G65240 120 / 1e-29 Leucine-rich repeat protein kinase family protein (.1.2) AT2G23950 106 / 8e-25 Leucine-rich repeat protein kinase family protein (.1) AT5G10290 104 / 3e-24 leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G30520 103 / 1e-23 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) AT1G71830 100 / 6e-23 ATSERK1, SERK1 somatic embryogenesis receptor-like kinase 1 (.1) AT1G34210 99 / 2e-22 ATSERK2, SERK2 somatic embryogenesis receptor-like kinase 2 (.1) AT3G43740 93 / 8e-22 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT4G33430 97 / 1e-21 SERK3, RKS10, ELG, BAK1, ATSERK3, ATBAK1 RECEPTOR KINASES LIKE SERK 10, ELONGATED, SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 3, BRI1-associated receptor kinase (.1.2) AT5G21090 92 / 2e-21 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025703 [exp] 288 / 1e-93 AT5G63710 358 / 3e-118 Leucine-rich repeat protein kinase family protein (.1) Lus10000629 [exp] 109 / 1e-25 AT5G10290 914 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10028716 [exp] 105 / 2e-24 AT1G71830 1000 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10030898 [exp] 101 / 4e-23 AT1G60800 931 / 0.0 NSP-interacting kinase 3 (.1) Lus10030591 [exp] 101 / 6e-23 AT1G60800 929 / 0.0 NSP-interacting kinase 3 (.1) Lus10006057 [exp] 100 / 1e-22 AT1G71830 954 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Lus10023146 [exp] 99 / 1e-22 AT5G10290 680 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10002579 [exp] 95 / 1e-22 AT5G21090 275 / 3e-94 Leucine-rich repeat (LRR) family protein (.1) Lus10019145 [exp] 99 / 4e-22 AT5G16000 935 / 0.0 NSP-interacting kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001800 [exp] 235 / 2e-71 AT5G63710 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G306000 [exp] 230 / 1e-69 AT5G63710 791 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.007G094500 [exp] 108 / 2e-25 AT5G10290 837 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.003G166200 [exp] 100 / 3e-24 AT5G21090 275 / 2e-94 Leucine-rich repeat (LRR) family protein (.1) Potri.007G082400 [exp] 104 / 4e-24 AT1G34210 954 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G074200 [exp] 103 / 5e-24 AT5G10290 855 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.013G117200 [exp] 103 / 6e-24 AT1G34210 1013 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.019G087700 [exp] 102 / 1e-23 AT1G34210 1012 / 0.0 somatic embryogenesis receptor-like kinase 2 (.1) Potri.005G083300 [exp] 102 / 2e-23 AT1G71830 981 / 0.0 somatic embryogenesis receptor-like kinase 1 (.1) Potri.017G108000 [exp] 102 / 2e-23 AT5G16000 995 / 0.0 NSP-interacting kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035959 pacid=23141213 polypeptide=Lus10035959 locus=Lus10035959.g ID=Lus10035959.BGIv1.0 annot-version=v1.0 ATGCCTACTGCATCACTTTCAGACGAGGGAGCAAGAAGGTCCATGGCTGAACATGGTTTGGCCGCCAGAACAAATAAGGGTTTTGGTTATTTGTGGGGAT GTCATCACCTAATTATAAAGCTATTCATCAGCTGTGTTGTACTGCTCAACTTGGTCACCACAGGCACTCGTTCATCCCAGGAACCTGATGTTGAAGGGGA AGCGTTGATCAAGCTTTTGAAAGCCCTCCATGACTCCAAGAAGCAAATCACAGATTGGAATTACTACTTCGTCAGCCCTTGCAACAGTTGGTCTCATGTC ACCTGCAGAAATGGAAGTGTCATCTCTTTGAGCTTGGGTTCAAAGGGATTCACTGGAACTCTTTCCCCTGAAATTACCAAGCTCAAGTCCTTGATTAGCC TGGAACTGCATGACAATAATCTGTCAGGACCATTACCTGATTACCTTGGCAGCATGACCCGCCTTCAGGTTCTAAACATAGCTAACAATAACTTCAACGG CTCCATACCCACTACTTGGGATCACCTCTCCAACTTAAACCACTTGGATGTTTCATCAAATACCGCTCTCACGGGTAACATACCAAGCCAGCTATTCAAA GTTGGAATTTTCAATTTTACAGGGACTCGTCTTGCATGTGGGTTGAGCTTGGAAGAGCCTTGTTATTCTAGCTCTCTCAGACCTGCACCAGCTGCTTCAG CAAAAAGTTCAAAATCCAGGCTCAAAATCATCCTCTCCGCTTCCTCTGCTGCTTTCTCACTTGTTCTTATCGGAGTTGCCTACTTGGCTTGCCGATACTA TCGCATCCGCAAGCGCCTCACCCAAGATATCTTCATCAGGAAGGTAGCGAGGGAGAAGAGATTGGAGGACATAGTAGATAAGAACTTGGAGAGGGAGGAT TACGAGGTAAAAGAGGTGGAAAGGATGGTGCAGGTGGCGTTGTTGTGCACACAAAGCTCACCGGAGGAGCGGCCGAGGATGGGGGAAGTGGTAAAGATGT TGGGAGGAGAAGGGGCGGAGCTGGAAGAGAGATGGGCAGAGTGGGAGCAAGTTGAGGATGTGAGGAACGAGCAGGAGTTTGCGCTGCTCTTCGCTCATGG CCACCACTTTGCCAATATCTGGACCGACGATTCTACAAATCAAGAGGCTATTCAGTTGTCCAAGCCTAGATGA
AA sequence Show only first row Show all	>Lus10035959 pacid=23141213 polypeptide=Lus10035959 locus=Lus10035959.g ID=Lus10035959.BGIv1.0 annot-version=v1.0 MPTASLSDEGARRSMAEHGLAARTNKGFGYLWGCHHLIIKLFISCVVLLNLVTTGTRSSQEPDVEGEALIKLLKALHDSKKQITDWNYYFVSPCNSWSHV TCRNGSVISLSLGSKGFTGTLSPEITKLKSLISLELHDNNLSGPLPDYLGSMTRLQVLNIANNNFNGSIPTTWDHLSNLNHLDVSSNTALTGNIPSQLFK VGIFNFTGTRLACGLSLEEPCYSSSLRPAPAASAKSSKSRLKIILSASSAAFSLVLIGVAYLACRYYRIRKRLTQDIFIRKVAREKRLEDIVDKNLERED YEVKEVERMVQVALLCTQSSPEERPRMGEVVKMLGGEGAELEERWAEWEQVEDVRNEQEFALLFAHGHHFANIWTDDSTNQEAIQLSKPR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63710			Leucine-rich repeat protein ki...		Lus10035959 [exp]	0	1
					Lus10010378 [exp]	1.4	0.9715
					Lus10032860 [exp]	2.8	0.9680
AT5G63710			Leucine-rich repeat protein ki...		Lus10025703 [exp]	2.8	0.9538
AT5G27690			Heavy metal transport/detoxifi...		Lus10020906 [exp]	3.9	0.9512
AT2G36650			unknown protein		Lus10014389 [exp]	4.6	0.9538
AT4G32870			Polyketide cyclase/dehydrase a...		Lus10006042 [exp]	4.9	0.9509
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10011063 [exp]	5.7	0.9487
AT2G17700		STY8	serine/threonine/tyrosine kina...		Lus10004153 [exp]	6.6	0.9436
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10039701 [exp]	7.6	0.9183
AT5G27690			Heavy metal transport/detoxifi...		Lus10033469 [exp]	8.7	0.9358

Compare expression of checked genes

Lus10035959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.