Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13340 69 / 1e-13 unknown protein AT1G10890 40 / 0.0007 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025702 [exp] 131 / 2e-34 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10043141 [exp] 55 / 7e-09 AT1G10890 143 / 5e-42 unknown protein Lus10032609 [exp] 50 / 1e-06 AT1G04610 248 / 7e-75 YUCCA 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001900 [exp] 93 / 4e-22 AT5G13340 94 / 1e-22 unknown protein Potri.001G306100 [exp] 89 / 9e-21 ND / Potri.001G211000 [exp] 62 / 5e-11 AT1G10890 76 / 8e-16 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035960 pacid=23140998 polypeptide=Lus10035960 locus=Lus10035960.g ID=Lus10035960.BGIv1.0 annot-version=v1.0 ATGGGGAGGAGCGTGTCTCGGTCGCCGTCGCATCGGAGGAGATACTCTCCATCCCCCGACCGCCGCCATAGCCGAAGACCTAAAAGGGGTAGGAGCAGAA GCAGCCGCTCTCCTCATTCCAGGCGTAGAAGTCCTTCTGCTTCTCCACGTAGGCGCAGAAGCCCTTCTTCCAGTCATAATAAACGCCATAAGAGCCGGTC ACCGAGACCAAGGAGGCATAGAAGACGCAGAAGTAGGAGTGAGTCTTCTTCTCCGTCTAAGTCGTCTTCCCCAAGCTATGAGCGCATCAGAATTGCCAAT GAAAAGCTGAAGAAGGAAGAGCAAGAGAAGAAGAGGCGTGAACAAGAAGCAGAACTGAAGCGGTTAGAGGAAGAGACTGCTAGAAGAGTGGAGGAAATGG TACGGAAAAATGTGGAGGAAAGGTTGAATTCGGAAGAAGTAAAGGTAGAGATAGAGAGAAGGATAGAAGAAGGCCGGAAGAAGCTGTATGATGGTGTTGT TGCCCAACTGGAAAAGGAAAAACAAGCTGCTCTTGATGATGCGAGACAGAAACAGGAACAAGCTAGGAAAGAGAGGGAAGAGCTGGATAAGATGCTGGAA GAGAACAGGAGGAGGGTGGAGGAGTCGCAGAGACGAGAAGCGTTAGAGCAGCAGCGAAAGGATGAGGAACGGTACAGAGAGTTGGAGGTTTTACAGAGAC AGAAGGAAGAAGGAATGAGGAGGAAGAAGGTTGAAGAGGAGGAAGAACGTGGAAAGCTGTTGGGTAATAGTACTAGTAGCAGGGATAAACCTCGACACTC TTCTTTGGGTTTTGGTTAA
AA sequence Show only first row Show all	>Lus10035960 pacid=23140998 polypeptide=Lus10035960 locus=Lus10035960.g ID=Lus10035960.BGIv1.0 annot-version=v1.0 MGRSVSRSPSHRRRYSPSPDRRHSRRPKRGRSRSSRSPHSRRRSPSASPRRRRSPSSSHNKRHKSRSPRPRRHRRRRSRSESSSPSKSSSPSYERIRIAN EKLKKEEQEKKRREQEAELKRLEEETARRVEEMVRKNVEERLNSEEVKVEIERRIEEGRKKLYDGVVAQLEKEKQAALDDARQKQEQARKEREELDKMLE ENRRRVEESQRREALEQQRKDEERYRELEVLQRQKEEGMRRKKVEEEEERGKLLGNSTSSRDKPRHSSLGFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13340			unknown protein		Lus10035960 [exp]	0	1
AT5G05210			Surfeit locus protein 6 (.1.2)		Lus10023712 [exp]	1.0	0.9544
AT3G13780			SMAD/FHA domain-containing pro...		Lus10037628 [exp]	1.7	0.9027
AT2G36130			Cyclophilin-like peptidyl-prol...		Lus10017010 [exp]	2.4	0.9259
AT1G61620			phosphoinositide binding (.1)		Lus10002584 [exp]	4.9	0.8908
AT3G07590			Small nuclear ribonucleoprotei...		Lus10028022 [exp]	5.0	0.8852
AT2G44430			DNA-binding bromodomain-contai...		Lus10010335 [exp]	9.3	0.8202
AT1G03330			Small nuclear ribonucleoprotei...		Lus10029641 [exp]	9.8	0.8720
AT1G26340		B5 #6, B5#6, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10000651 [exp]	10.6	0.8458
AT5G16060			Cytochrome c oxidase biogenesi...		Lus10033547 [exp]	12.2	0.8358
AT2G44430			DNA-binding bromodomain-contai...		Lus10021861 [exp]	12.3	0.8233

Compare expression of checked genes

Lus10035960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.