Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03200 435 / 2e-150 Eukaryotic aspartyl protease family protein (.1) AT1G01300 226 / 9e-69 Eukaryotic aspartyl protease family protein (.1) AT3G18490 221 / 2e-66 Eukaryotic aspartyl protease family protein (.1) AT3G61820 219 / 4e-66 Eukaryotic aspartyl protease family protein (.1) AT1G25510 211 / 5e-63 Eukaryotic aspartyl protease family protein (.1) AT1G64830 198 / 2e-58 Eukaryotic aspartyl protease family protein (.1) AT5G33340 196 / 1e-57 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT3G20015 189 / 8e-55 Eukaryotic aspartyl protease family protein (.1) AT2G35615 180 / 1e-51 Eukaryotic aspartyl protease family protein (.1) AT1G31450 166 / 2e-46 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025702 [exp] 711 / 0 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 238 / 3e-73 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041151 [exp] 235 / 2e-72 AT5G33340 445 / 1e-154 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10040325 [exp] 234 / 6e-72 AT5G33340 451 / 5e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10023445 [exp] 230 / 2e-70 AT5G33340 448 / 9e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10022912 [exp] 225 / 1e-68 AT5G33340 450 / 1e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 224 / 4e-68 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10024910 [exp] 217 / 2e-65 AT5G33340 452 / 2e-157 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Lus10018825 [exp] 211 / 3e-63 AT5G33340 432 / 1e-149 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G002100 [exp] 468 / 1e-163 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 462 / 3e-161 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 232 / 7e-71 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 226 / 1e-68 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 224 / 9e-68 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 219 / 4e-66 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G063000 [exp] 213 / 1e-63 AT3G20015 560 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.007G106300 [exp] 209 / 4e-62 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G114400 [exp] 206 / 1e-61 AT5G33340 475 / 1e-166 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) Potri.003G105300 [exp] 201 / 2e-59 AT2G35615 414 / 2e-142 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [flax] [poplar] Peptidase_AA PF00026 [flax] [poplar] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Lus10035961 pacid=23141110 polypeptide=Lus10035961 locus=Lus10035961.g ID=Lus10035961.BGIv1.0 annot-version=v1.0 ATGTCTCCTTTGATTCCAGCAGCTACGTTATTATTATTACTATTGTCATCTTCTCCACCTGCAGCAGCTTCCACGCCTTCCACGCTAAGTCATGGTTTCC GTTTGGCCCTTACACACGTTGACTCCGGCAAGAACCTCACCAAATTCGAGCGGCTCCAGCGTGGAATCAAGCGAGGCAACTCCAGACTCCACAAGCTCAA CTCAATGGCCCTTCTAGCATCATCCGACGACGACAACAACAACAACAACGACCACGGCAATGACTTCTCCGCTCCTATTGTAGCTGGGAGCGGCGAGTTC CTGGTGCAGCTCGCCATCGGGACCCCACCCGTATCCTACTCGGCAATTGTGGATACGGGCAGCGACCTCATATGGACCCAATGCTCCCCTTGCACCCAGT GTTACAAGCAGCCCACTCCAATTTTCGACCCCGCCAATTCATCAACTTTCTCCAAGCTCCCTTGCTCCAGCGACCTCTGCTCCGCCTTGCCGCAATCTTC GTGCGGATCCGACGGCTGCGATTACCTCTACACCTACGGTGACTACTCCTCCACACAGGGGATCCTCGCCACCGAGACTTTCACCTTCGGCAAAGTCAAA CTCCCCCGGGTCGGGTTCGGGTGCGGGGAGGACAACGAAGGCGACGGGTTCACCCAAGGTGGCGGGCTTGTTGGGCTTGGACGTGGGCCCCTTTCTTTAG TCTCCCAACTTAAAGAGCCCAAGTTCTCCTATTGTTTGACCTCAATCGATGATGCGGGGGCCACCAGCACGCTTTCCATGGGCTCCCTGGCTGGGGGTTC GGTAGTAGGTAACGCTTCCAAAACGACGGCGTTGATTAAGAACCCGGGGCAGGGGTCGTTTTATTACCTTGGGCTGGAAGGAATCTCGGTTGGTGGAGAT CGCTTGCCCATCAAGAAATCGACATTTGAAGTGCAGGATGATGGGAGTGGTGGGATGATTATCGACTCCGGGACAACCATCACGTATTTGGAACGAAGCT CTTTTGACGAGGTGAAGAAGGCTATTAAGGGTGGGATGAAGGATATGAAAGTCGACGAATCTGGTTCGACCGGTCTGGATTTATGCTTTGAGTTGAGTAG TGGCGGGTCGTCGATTGAGGTGCCGACGATGGTACTGCATCTGGAAGGAGGTGCGGATTTGGAATTGCCGGTGGAAAACTACATGATATCAGATTCAAAC GTTGGGTTGGTATGTCTGGCGATGGGGGGTTCGAGTGGTATGTCGATATTGGGGAATATTCAGCAACAAAATTTGATGGTTGTGTATGATTTGGGCAAAG AGACGTTGTCTTTCACGCCTACTCATTGTGATAAGCTGTAG
AA sequence Show only first row Show all	>Lus10035961 pacid=23141110 polypeptide=Lus10035961 locus=Lus10035961.g ID=Lus10035961.BGIv1.0 annot-version=v1.0 MSPLIPAATLLLLLLSSSPPAAASTPSTLSHGFRLALTHVDSGKNLTKFERLQRGIKRGNSRLHKLNSMALLASSDDDNNNNNDHGNDFSAPIVAGSGEF LVQLAIGTPPVSYSAIVDTGSDLIWTQCSPCTQCYKQPTPIFDPANSSTFSKLPCSSDLCSALPQSSCGSDGCDYLYTYGDYSSTQGILATETFTFGKVK LPRVGFGCGEDNEGDGFTQGGGLVGLGRGPLSLVSQLKEPKFSYCLTSIDDAGATSTLSMGSLAGGSVVGNASKTTALIKNPGQGSFYYLGLEGISVGGD RLPIKKSTFEVQDDGSGGMIIDSGTTITYLERSSFDEVKKAIKGGMKDMKVDESGSTGLDLCFELSSGGSSIEVPTMVLHLEGGADLELPVENYMISDSN VGLVCLAMGGSSGMSILGNIQQQNLMVVYDLGKETLSFTPTHCDKL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03200			Eukaryotic aspartyl protease f...		Lus10035961 [exp]	0	1
AT2G03200			Eukaryotic aspartyl protease f...		Lus10025702 [exp]	3.0	0.9825
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10015576 [exp]	3.5	0.9807
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10020549 [exp]	4.5	0.9773
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10006258 [exp]	6.0	0.9782
AT1G13680			PLC-like phosphodiesterases su...		Lus10012600 [exp]	8.1	0.9377
AT3G51325			RING/U-box superfamily protein...		Lus10018292 [exp]	8.4	0.9754
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10032593 [exp]	11.5	0.9735
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Lus10029638 [exp]	12.0	0.9642
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10027782 [exp]	12.0	0.9743
AT3G52790			peptidoglycan-binding LysM dom...		Lus10031662 [exp]	12.2	0.9564

Compare expression of checked genes

Lus10035961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.