Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08720 852 / 0 unknown protein AT4G01650 86 / 9e-19 Polyketide cyclase / dehydrase and lipid transport protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025701 [exp] 1316 / 0 AT5G08720 832 / 0.0 unknown protein Lus10007203 [exp] 82 / 9e-17 AT4G01650 257 / 5e-86 Polyketide cyclase / dehydrase and lipid transport protein (.1.2) Lus10010086 [exp] 81 / 2e-16 AT4G01650 257 / 2e-86 Polyketide cyclase / dehydrase and lipid transport protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G070700 [exp] 923 / 0 AT5G08720 906 / 0.0 unknown protein Potri.014G110600 [exp] 87 / 1e-18 AT4G01650 259 / 2e-86 Polyketide cyclase / dehydrase and lipid transport protein (.1.2) Potri.002G185100 [exp] 87 / 2e-18 AT4G01650 246 / 9e-82 Polyketide cyclase / dehydrase and lipid transport protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF03364 [flax] [poplar] Polyketide_cyc Polyketide cyclase / dehydrase and lipid transport
Representative CDS sequence Show only first row Show all	>Lus10035962 pacid=23141017 polypeptide=Lus10035962 locus=Lus10035962.g ID=Lus10035962.BGIv1.0 annot-version=v1.0 ATGGTGATGCAGTCTCCCATTTCATCGTCACTGCCTTCCATTTCATACACCTGTTATTGTTGCACCAAATCACGTCGCTTCATCTTCTTCGAGAAATGCG TCTCGTTACCGGATAGGAGCAGCCGAAGCAATGTGGTGTGTTTATCCTCCAGATCACCAAAGAAATGGAACAGTAACTACGGCGGAAGCATGGCATGCAA TGGCGGGGCTGTAATAAAAGACGAAGAAGAAGGCGGAGTTGAGGTTAGTAGGAGGAGGAGGAGTAGGAGGAGGCAGCGGTCTGTTCCTTGTGAGGTGGAA GTTGTTTCTTGGCGGGAACGGAAGATTAGGGCTCATATCCATGTCAATTCCGATGTCCAATCCGTCTGGATAGCACTAACTGATTATGAACGCCTCGCCG ATTTCATTCCTAACCTCATCTCAAGTGGAAGAATCCCTTGCCCGCATCCAGGACGGATATGGCTTGAACAGAGAGGATTGCAGAGGGCTCTTTATTGGCA CATTGAAGCTCGTGTTGTGTTGGATCTCCAAGAACTCCCCATTTCTGATGATTGCCACGAGCTACACTTTTCCATGGTCGATGGTGACTTTAAGAAGTTT GAAGGCAAATGGTCCGTCAACTCTGGGGCAAGGCCTGGAACAACTGTATTGTCTTACGAAGTTAGTGTCATACCAAGGTTCAACTTCCCTGCTATTTTCT TGGAAAGAATCATCAGGTCGGATCTTCCTGTCAATCTCCAGGCCTTGGCTTGTCGTGCTGAGAAGCAAGTTATAGCCAAGTCCGATCATAAGACCAAAAC GGACGAATTGTCAAGATCCATCTCAGAGCCTAGAATTTTAGGAGACACCTATAGCACCGCAAATCTGAGCCCTGTTCCAGCATCCCCAAGCGACATCAGT TGTAATTGGGGTATTTTTGGTAAAGCCTGTAGTCTTGATAGGCGGTGCCTGGTAGATGAAGTCCATTTGCGAAGATTTGACGGCTTATTGGAAAATGGAG GTGTTCATCGTGGCGTTGTGGCTACCATAACTGTAAAAGCTCCTCTTCGCGAGGTTTGGAATGTTTTGACCTCTTATGAGAGTCTTCCTGAGATTGTTCC AAACTTAGCAATCAGCAAGATTCTATCTCGTGAAAACAACAAAGTTCGCATTCTTCAGGAAGGTTGCAAGGGTTTACTCTATATGGTACTTCATGCACGT GTTGTTTTGGATTTATGCGAACGATATGAACAAGAGATCAGTTTTGAGCAGGCGGAAGGAGACTTTGACTCATTTCATGGAAAGTGGGTCCTAGAACAGC TGGGAAGTCATCATACATTACTCAAATACATTGTCGAATCCAAAATGCATAAAGATACCTTTCTCTCAGAGGCTATAATGGAAGAGGTTATATATGAAGA TCTCCCATCAAACTTGTGTGCAATTCGAGATTATGTTGAGAAAAAGCAGGCTGTGAATTCTTCCGAACCACTCAGGAAGTATTCTGAGCTTAAACTTTCC AGTGATGATAGTGACCTTAATACTACTTCAGCAGAAGAACAAGTTACAGACTTTGATGAAGTCATCTCTTCAAGACAAAAGCCGAGAGTCCCAGGCTTAC AACGGGACGTTGAAATTCTGAAATCAGAACTCCTGAAGTTTGTATCACAACACGGGCAGGAGGGATTCATGCCCATGAGAAAGCAACTCCGTCTGCATGG AAGAGTGGACATAGAGAAGGCCATAACTCGCATGGGTGGATTTAGACGAATTGCATCATTGATGAATCTATCTCTTGCATACAAGAAGAGGAAACCCAAA GGATACTGGGACAGCCTCGATACTTTGCAGGAAGAGATTAATCGATTCCAGAGGAGTTGGGGCATGGACCCTTCTTTTATGCCAAGCAGAAAATCTTTTG AGCGTGCAGGTCGTTATGATATTGCACGTGCATTGGAGAAATGGGGAGGGGTTCATGAAGTTTCTCGGCTGTTGGCACTTAATGTTCGGTATCCCAATAA ACAGTTAGATGTGGTTAGAGAAAAAAAGTTTGACCATTGGGCATCAAGTACCTTTGAAGAGGAGCAAAAAGTTCCTTCAACAAAATATTACACACCTCAA AAAACTCGTAAATCGCTCACCACATTGGAAGACTTGGACATTGATTGGGGTGAATAA
AA sequence Show only first row Show all	>Lus10035962 pacid=23141017 polypeptide=Lus10035962 locus=Lus10035962.g ID=Lus10035962.BGIv1.0 annot-version=v1.0 MVMQSPISSSLPSISYTCYCCTKSRRFIFFEKCVSLPDRSSRSNVVCLSSRSPKKWNSNYGGSMACNGGAVIKDEEEGGVEVSRRRRSRRRQRSVPCEVE VVSWRERKIRAHIHVNSDVQSVWIALTDYERLADFIPNLISSGRIPCPHPGRIWLEQRGLQRALYWHIEARVVLDLQELPISDDCHELHFSMVDGDFKKF EGKWSVNSGARPGTTVLSYEVSVIPRFNFPAIFLERIIRSDLPVNLQALACRAEKQVIAKSDHKTKTDELSRSISEPRILGDTYSTANLSPVPASPSDIS CNWGIFGKACSLDRRCLVDEVHLRRFDGLLENGGVHRGVVATITVKAPLREVWNVLTSYESLPEIVPNLAISKILSRENNKVRILQEGCKGLLYMVLHAR VVLDLCERYEQEISFEQAEGDFDSFHGKWVLEQLGSHHTLLKYIVESKMHKDTFLSEAIMEEVIYEDLPSNLCAIRDYVEKKQAVNSSEPLRKYSELKLS SDDSDLNTTSAEEQVTDFDEVISSRQKPRVPGLQRDVEILKSELLKFVSQHGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRRIASLMNLSLAYKKRKPK GYWDSLDTLQEEINRFQRSWGMDPSFMPSRKSFERAGRYDIARALEKWGGVHEVSRLLALNVRYPNKQLDVVREKKFDHWASSTFEEEQKVPSTKYYTPQ KTRKSLTTLEDLDIDWGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08720			unknown protein		Lus10035962 [exp]	0	1
AT5G08720			unknown protein		Lus10025701 [exp]	1.0	0.9811
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10036636 [exp]	2.4	0.9609
AT3G15354		SPA3	SPA1-related 3 (.1)		Lus10043323 [exp]	3.0	0.9552
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10035853 [exp]	3.9	0.9444
AT5G07020			proline-rich family protein (....		Lus10005388 [exp]	6.9	0.9451
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10024971 [exp]	7.1	0.9089
AT5G58330			lactate/malate dehydrogenase f...		Lus10037935 [exp]	7.5	0.9324
AT2G21340			MATE efflux family protein (.1...		Lus10041955 [exp]	8.7	0.9208
AT5G21222			protein kinase family protein ...		Lus10034924 [exp]	8.9	0.9204
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Lus10005365 [exp]	9.2	0.9151

Compare expression of checked genes

Lus10035962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.