Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80190 254 / 1e-85 PSF1 partner of SLD five 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025699 [exp] 384 / 2e-136 AT1G80190 283 / 4e-97 partner of SLD five 1 (.1) Lus10036085 [exp] 308 / 2e-101 AT1G80190 253 / 1e-80 partner of SLD five 1 (.1) Lus10026797 [exp] 115 / 4e-31 AT5G11280 121 / 1e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G142300 [exp] 318 / 5e-111 AT1G80190 290 / 6e-101 partner of SLD five 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05916 [flax] [poplar] Sld5 GINS complex protein
Representative CDS sequence Show only first row Show all	>Lus10035964 pacid=23141146 polypeptide=Lus10035964 locus=Lus10035964.g ID=Lus10035964.BGIv1.0 annot-version=v1.0 ATGTATGCTAGAAAGGCTTATGAGTTGGTGAAGGAGTTTTCCCAGTGCGAGAAAGGTCGTCTTCAGCAATTCAATGAGGATTTGTTCAACCAAGTCATTG ATCAATGCACTCAACATTACCTGGAGCTTGAAGCTTTAATTAGGAAAATGCAGGAAGATAATGTGGATGTGACGGAAACCAGAAATGAGGATCACTACGG AGCTCTTGTTCACCACCTCTCTTTGACTCGCAACAAACGCTGCTTAATGGCCTATGTGTATAACCGAACCGAAGTTATACAAAGTTTGGCATGGAAAGTG GGGTTTGAGCTCTTTGAGCTTCCAGAAGAAATTCTAGAGAAGCTCAGTGACTCGGAGAAAAACTATTTTGGGAAGCATTCTGCTGCTCTACAGTCCTATA TGGCTGATGTTGATATTGACTTGAACGTGGACATGGTGCCGCCTAAAGATCCCTACATCAAGGTGAGGGTTCTTGATGACATGGGTGGAGGGATAATGCT AAGTGACAAGACTGCCAATCTTGCTCGTCACTCAATGCACTTTCTGAAGAGAACTGATGCTGAGCAATATATTGCTCGGCAGTGTTGTAACGGTTTTGAA TCAGGTGTGTTGCGAGACCGTGATGTAATGATTGAAGAGCTAGCTTCCATGGTCCACCAAGAACTACATGGTTATAGTCCACCACCGCCGAGAACCGTGC TACAAAAAAGAGTTCGAGATGTTGGTCACTTAGATGACCCTGTCTTCGTCCAAGAACTTTGA
AA sequence Show only first row Show all	>Lus10035964 pacid=23141146 polypeptide=Lus10035964 locus=Lus10035964.g ID=Lus10035964.BGIv1.0 annot-version=v1.0 MYARKAYELVKEFSQCEKGRLQQFNEDLFNQVIDQCTQHYLELEALIRKMQEDNVDVTETRNEDHYGALVHHLSLTRNKRCLMAYVYNRTEVIQSLAWKV GFELFELPEEILEKLSDSEKNYFGKHSAALQSYMADVDIDLNVDMVPPKDPYIKVRVLDDMGGGIMLSDKTANLARHSMHFLKRTDAEQYIARQCCNGFE SGVLRDRDVMIEELASMVHQELHGYSPPPPRTVLQKRVRDVGHLDDPVFVQEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80190		PSF1	partner of SLD five 1 (.1)		Lus10035964 [exp]	0	1
AT5G10940		ASG2	ALTERED SEED GERMINATION 2, tr...		Lus10040538 [exp]	18.1	0.8407
AT1G68140			Protein of unknown function (D...		Lus10004940 [exp]	26.2	0.8326
AT3G58680		MBF1B, ATMBF1B	multiprotein bridging factor 1...		Lus10013686 [exp]	28.7	0.8363
AT1G31870			unknown protein		Lus10033140 [exp]	34.6	0.8320
AT1G18390			Protein kinase superfamily pro...		Lus10022432 [exp]	38.5	0.8250
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10035409 [exp]	41.9	0.8342
AT1G65280			DNAJ heat shock N-terminal dom...		Lus10014815 [exp]	45.7	0.7922
AT5G14440			Surfeit locus protein 2 (SURF2...		Lus10022288 [exp]	45.8	0.8137
AT2G25280			unknown protein		Lus10001950 [exp]	53.1	0.8244
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027570 [exp]	63.1	0.8091

Compare expression of checked genes

Lus10035964 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.