Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52950 699 / 0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) AT2G36500 637 / 0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50530 486 / 4e-167 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50640 486 / 4e-167 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G63490 460 / 6e-157 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT1G47271 52 / 2e-07 Cystathionine beta-synthase (CBS) family protein (.1) AT5G10860 49 / 2e-06 CBSX3 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) AT4G34120 42 / 0.0005 CBSX2, CDCP1, LEJ1 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025698 [exp] 1021 / 0 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10032625 [exp] 498 / 1e-171 AT5G50530 721 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Lus10043123 [exp] 490 / 1e-168 AT5G50530 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Lus10019117 [exp] 49 / 3e-06 AT5G10860 347 / 2e-123 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10021675 [exp] 45 / 7e-05 AT5G10860 338 / 7e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10034441 [exp] 46 / 8e-05 AT5G10860 350 / 4e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10035014 [exp] 44 / 9e-05 AT5G10860 341 / 5e-121 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10001964 [exp] 44 / 0.0001 AT1G47271 202 / 5e-66 Cystathionine beta-synthase (CBS) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098400 [exp] 743 / 0 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.005G070500 [exp] 722 / 0 AT3G52950 750 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.012G099600 [exp] 525 / 0 AT5G50530 639 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.015G098100 [exp] 489 / 3e-168 AT5G50530 628 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.013G161500 [exp] 52 / 2e-07 AT5G10860 343 / 8e-122 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.005G228300 [exp] 50 / 1e-06 AT1G47271 251 / 1e-85 Cystathionine beta-synthase (CBS) family protein (.1) Potri.017G000100 [exp] 50 / 1e-06 AT5G10860 339 / 2e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.001G303900 [exp] 43 / 0.0003 AT4G34120 267 / 1e-90 LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1, CYSTATHIONE [BETA]-SYNTHASE DOMAIN-CONTAINING PROTEIN 1, CBS domain containing protein 2, Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10035965 pacid=23141229 polypeptide=Lus10035965 locus=Lus10035965.g ID=Lus10035965.BGIv1.0 annot-version=v1.0 ATGAGCACTCATGGCATCCCTCCTCCTCCGCCTCGACGGAGCACTGTGAACCAAAAGCAGCGAGGTCCATCGGCCTCCTCCAAGAAATCCTCCGTCGCGG TTTCCGAAAACGGAAGCGCCAATGGAACCTCCCCCAAGCCATCCTCTCCTTCGTCTGGTAGCGGGGAGAGGACTGTGAAGAAATTGAGGCTCTCTAAAGC TCTTACCATTCCGGAAGGCACCACCGTCTCCGATGCCTGTCGAAGGATGGCAGCCCGCCGGGTCACTGCTGTTCTTCTTACCGATGCTAATGCTCTGCTT TCGGGAATTTGCACTGACAAGGATATTGCTGCTAGAGTAATAGCAGAAGGCTTGAGACCCGACCAGACGATTGTGTCGAAGATAATGACGAGGAATCCTA TTTTTGTTGCATCAGATGCTTTAGCAATTGAAGCTCTTCAAAAGATGGTCCAGGGAAAGTTCAGGCACCTTCCTGTTGTAGAGAATGGTGAAGTTATTGC TTTATTGGACATTACGAAGTGTCTCTATGATGCTATTTCAAGGATGGAAAAAGCTGCTGAGCAGGGAAGTTCAATTGCTACAGCTGTTGAAGGAATGGAA CGTCAATTGGGCCAAAATGCATCTGCTCAATATTCATTTATAGAGACTCTGAGGGAGAGGATGTTCAAACCTTCCTTATCGACTATCATTGGTGACGAGA AGGTTGCAATTGCAGCACCATCAGATCCTGTCTCTGTTGCTGCTAAAAAGATGAGAGATTTGAAGGTTAATTCTGCTATTGTGTCGACTGGGAATAAAAT TCTGGGGATACTAACCTCAAAGGATATCCTCATGCGGGTTGTTGCTCTAAATCTTTCTCCTGAGTTGACTTTGGCTGAAAAGGTGATGACTCCAAATCCT GAGTGTGCTACACTGGAGACCACAATCCTCGATGCATTGCATATAATGCATGATGGAAAATTTTTACATCTCCCTGTCGTGGATAAAGATAGAACAGTTG TTGGATGCCTGGACGTTCTGCAGATAACGCATGCAGCAATTTCCATGGTTGAAAGCAACTCTGGAGCTGTCAATGACATGGCAAGCTCAATGATGCAAAA GTTTTGGGATTCTGCCCTTGCTTTAGAGCCACCAGATGATTTTGACACACAAAGTGAAATGTCCGTTATGATGACATCTGATGTTCCTGAACTTGGGAAG TCCATTCCATCTCTCAGTCATGGAAATGCCTTCTCTTTCAAATTTGTAGACCTGAAAGGTCGAATTCATAGAATTAATTGTGGCATAGGAATCTGGTTTA TATGCGGCCATGTTTATTTTCAAGAGTGTTATCTTACTTTTGGACGACCCTTAGGTACTGAAAAATTAGAAGAACTTGTATCTGCTGTCTTGGATAGAAT TGGTGCAACCGGCGAACATCACCCTCAGCTTTTGTATGAAGATGATGAAGGTGACAAGGTTTTACTTGCCACCGATTCTGATCTAATAGGTGCTGTCGGT CATGCTAGATGTTCAGGTTTGAAGGTCTTGAGACTACATCTGGACTTACCCGAAACAAGCGATGAGAAGACAAAGGCAGAGTTTGATATGACCACAGTGG AGAGAAGTCAGTGGAGGTCTTACCAGTTTGGCATCTTAGCTGGTGCCGTGGCTTTGACAGGGATTGGCCTGGTAGTGTACCTGAAACGAACCCAGTGA
AA sequence Show only first row Show all	>Lus10035965 pacid=23141229 polypeptide=Lus10035965 locus=Lus10035965.g ID=Lus10035965.BGIv1.0 annot-version=v1.0 MSTHGIPPPPPRRSTVNQKQRGPSASSKKSSVAVSENGSANGTSPKPSSPSSGSGERTVKKLRLSKALTIPEGTTVSDACRRMAARRVTAVLLTDANALL SGICTDKDIAARVIAEGLRPDQTIVSKIMTRNPIFVASDALAIEALQKMVQGKFRHLPVVENGEVIALLDITKCLYDAISRMEKAAEQGSSIATAVEGME RQLGQNASAQYSFIETLRERMFKPSLSTIIGDEKVAIAAPSDPVSVAAKKMRDLKVNSAIVSTGNKILGILTSKDILMRVVALNLSPELTLAEKVMTPNP ECATLETTILDALHIMHDGKFLHLPVVDKDRTVVGCLDVLQITHAAISMVESNSGAVNDMASSMMQKFWDSALALEPPDDFDTQSEMSVMMTSDVPELGK SIPSLSHGNAFSFKFVDLKGRIHRINCGIGIWFICGHVYFQECYLTFGRPLGTEKLEELVSAVLDRIGATGEHHPQLLYEDDEGDKVLLATDSDLIGAVG HARCSGLKVLRLHLDLPETSDEKTKAEFDMTTVERSQWRSYQFGILAGAVALTGIGLVVYLKRTQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Lus10035965 [exp]	0	1
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10001184 [exp]	2.4	0.8434
AT4G16444			unknown protein		Lus10035992 [exp]	6.7	0.7934
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10017967 [exp]	8.1	0.8548
AT5G26670			Pectinacetylesterase family pr...		Lus10000253 [exp]	8.8	0.8359
AT4G30993			Calcineurin-like metallo-phosp...		Lus10040035 [exp]	9.2	0.7909
AT1G71810			Protein kinase superfamily pro...		Lus10017924 [exp]	17.0	0.8294
AT5G39980			Tetratricopeptide repeat (TPR)...		Lus10041429 [exp]	24.8	0.8083
AT1G60230			Radical SAM superfamily protei...		Lus10029159 [exp]	25.2	0.8088
AT1G64430			Pentatricopeptide repeat (PPR)...		Lus10003876 [exp]	25.3	0.8237
					Lus10035197 [exp]	26.5	0.7090

Compare expression of checked genes

Lus10035965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.