Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58220 337 / 4e-115 ALNS, TTL allantoin synthase, transthyretin-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025696 [exp] 556 / 0 AT5G58220 376 / 7e-130 allantoin synthase, transthyretin-like protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G238300 [exp] 438 / 5e-155 AT5G58220 360 / 1e-124 allantoin synthase, transthyretin-like protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09349 [flax] [poplar] OHCU_decarbox OHCU decarboxylase CL0287 [flax] [poplar] Transthyretin PF00576 [flax] [poplar] Transthyretin HIUase/Transthyretin family
Representative CDS sequence Show only first row Show all	>Lus10035966 pacid=23141026 polypeptide=Lus10035966 locus=Lus10035966.g ID=Lus10035966.BGIv1.0 annot-version=v1.0 ATGAATTTTGAAGAGAAGGATTGGCTAGCATGTTGTGGGAGCACCAGATTCGCCAAGGAGATGGCTTCAGCGTCCCCCTTCTCCTCGCTCGATCACGCCA TCTCTACAGCCAGAGATATCTGGTTCAATAAGGTGGATGTCAATGGTTGGCTAGAAGCTTTCGCCGCTCATCCTCAGATTGGTCAATCGTCCTCTGCCGC AGCTTCCCATACCGCTTCTGAGTTCAGTTTCTTGTTCCTTCTTCAGTCCGTGTTTTATTATAACTCTCATTTCCATTCAAAACCTTACCTGCCAATTCTG TTAAACGGGCTTGTCAGATGGAGCAAGGGAGAGCAGTCAACAGCAATATCCACTGCAACTACTTCCACCTTACAGGAACTAGCTGACTGGAACGCTCAGT ACAGGAAAAAGTTTGGATTCATTTTTCTTATATTTGCATCTGGCCGGAGTTCTGCTGAAATTCTTCTTCAACTCAAGAAACGCTATGAAAACCGGCCTAT AGTTGAGTTTGAGATCGCTGCTCAGGAGCAAATGAAGGTAACAGAGCTACGACTTGCAAAGCTCTTCTCAACGAGAACCAGATCTCTCGTAACAGAAGAC CGCGTGAACATTATCGGAGGCCATCTAACTGCTGCTACCGACTCTTCATCTGGAAAGCCATCTCAAGTTCCAACACGAACCCGCCCACCCATCACAACAC ATATCTTAGATGTATCAAGAGGGTTGCCAGCGGCTGATGTTGAGGTGGTTTTGGAAATGTGGCAGGGCAGTCAAGCTCGTCCCTCATTCCTGAAAACAAA TGTGGGCGAGTGGGTGTATCAAGGGTCTTCAACTACCAATGCAGATGGAAGGTCTGGGGAGTTGATGAGCATAGTTGATGCCGTGAACCCGGGAATATAT AGAATAAGTTTCAACACAGGCAAATACAATCCGGCTGGGTTCTTTCCATACGTGTCTATCGTGTTCGAAATCAAGGAGTGCCAGAAGTTGGAGCACTTTC ATGTTCCTTTGCTGCTTTCTCCCTTCTCGTTTTCTACTTACCGCGGGAGCTAG
AA sequence Show only first row Show all	>Lus10035966 pacid=23141026 polypeptide=Lus10035966 locus=Lus10035966.g ID=Lus10035966.BGIv1.0 annot-version=v1.0 MNFEEKDWLACCGSTRFAKEMASASPFSSLDHAISTARDIWFNKVDVNGWLEAFAAHPQIGQSSSAAASHTASEFSFLFLLQSVFYYNSHFHSKPYLPIL LNGLVRWSKGEQSTAISTATTSTLQELADWNAQYRKKFGFIFLIFASGRSSAEILLQLKKRYENRPIVEFEIAAQEQMKVTELRLAKLFSTRTRSLVTED RVNIIGGHLTAATDSSSGKPSQVPTRTRPPITTHILDVSRGLPAADVEVVLEMWQGSQARPSFLKTNVGEWVYQGSSTTNADGRSGELMSIVDAVNPGIY RISFNTGKYNPAGFFPYVSIVFEIKECQKLEHFHVPLLLSPFSFSTYRGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58220		ALNS, TTL	allantoin synthase, transthyre...		Lus10035966 [exp]	0	1
AT5G39510		ZIG1, SGR4, ATV...	SHOOT GRAVITROPSIM 4, VESICLE ...		Lus10034696 [exp]	2.0	0.9610
AT3G13200		EMB2769	EMBRYO DEFECTIVE 2769, Cwf15 /...		Lus10016651 [exp]	4.2	0.9446
AT2G25950			Protein of unknown function (D...		Lus10007454 [exp]	5.7	0.9437
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Lus10015168 [exp]	5.9	0.9435
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Lus10015563 [exp]	6.2	0.9514
AT5G11500			unknown protein		Lus10037899 [exp]	7.3	0.9335
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10035023 [exp]	7.9	0.9403
AT1G04555			unknown protein		Lus10014458 [exp]	9.2	0.9383
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10015630 [exp]	9.5	0.9416
AT1G56700			Peptidase C15, pyroglutamyl pe...		Lus10001521 [exp]	10.8	0.9383

Compare expression of checked genes

Lus10035966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.