Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31020 748 / 0 ORP1A OSBP(oxysterol binding protein)-related protein 1A (.1) AT4G08180 747 / 0 ORP1C OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) AT1G13170 668 / 0 ORP1D OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) AT2G31030 540 / 0 ORP1B OSBP(oxysterol binding protein)-related protein 1B (.1) AT4G22540 507 / 3e-173 ORP2A OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) AT4G12460 509 / 2e-171 ORP2B OSBP(oxysterol binding protein)-related protein 2B (.1), OSBP(oxysterol binding protein)-related protein 2B (.2) AT1G77730 177 / 2e-50 Pleckstrin homology (PH) domain superfamily protein (.1) AT3G09300 159 / 8e-42 ORP3B OSBP(oxysterol binding protein)-related protein 3B (.1) AT5G59420 150 / 5e-39 ORP3C OSBP(oxysterol binding protein)-related protein 3C (.1) AT5G02100 149 / 1e-38 UNE18, ORP3A UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025695 [exp] 1273 / 0 AT4G08180 887 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10028087 [exp] 766 / 0 AT4G08180 1147 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10025635 [exp] 761 / 0 AT4G08180 1142 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10036949 [exp] 660 / 0 AT1G13170 1241 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10006237 [exp] 639 / 0 AT1G13170 1219 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10024613 [exp] 610 / 0 AT4G22540 1065 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10032251 [exp] 522 / 3e-176 AT4G22540 979 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10024386 [exp] 156 / 6e-41 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) Lus10010843 [exp] 154 / 6e-40 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G172900 [exp] 764 / 0 AT4G08180 1158 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.002G088000 [exp] 761 / 0 AT4G08180 1144 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.010G051400 [exp] 665 / 0 AT1G13170 1211 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.019G015111 [exp] 539 / 0 AT4G08180 889 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.001G121700 [exp] 526 / 2e-177 AT4G22540 1109 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.003G111600 [exp] 525 / 8e-177 AT4G22540 1100 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.008G182766 [exp] 233 / 3e-70 AT1G13170 471 / 2e-161 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.006G086400 [exp] 150 / 9e-39 AT3G09300 764 / 0.0 OSBP(oxysterol binding protein)-related protein 3B (.1) Potri.018G143600 [exp] 70 / 2e-12 AT4G25850 412 / 2e-143 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) Potri.006G076400 [exp] 62 / 8e-10 AT5G57240 392 / 9e-136 OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01237 [flax] [poplar] Oxysterol_BP Oxysterol-binding protein CL0266 [flax] [poplar] PH PF00169 [flax] [poplar] PH PH domain
Representative CDS sequence Show only first row Show all	>Lus10035967 pacid=23141143 polypeptide=Lus10035967 locus=Lus10035967.g ID=Lus10035967.BGIv1.0 annot-version=v1.0 ATGCAAGATCCGCAACAGATCCCATTGATGCAGCTTCTCGATCACGACAACCACTCTCCACACTACATTCCGATGGCATCTTTCCGCTCCTTGGATCATA GTCGATCCGCCAACAGCTTCCGCCCCCACCGCGATTATCAATCTAACAATAATAACAACTACAACAATACTAATAATAATAATAATATAAATAATCGTCG CTCTCTGGATTACAAGTCCGCTTCCATGTACAGCATTAGGGATCAGGACGTGGATTACGGTGGTTCAGTTACAACAGCGTCAGGGGTGGTGTCAGGTATA TTGCAAAAGTGGGTGAATTACGGGAGGGGATGGCGGCCTAGGTGGTTCATTCTCCAGGACGGTGTCTTGTCTTATTATAAGATCCACGGCAAAGGCCAAC ACAACATCACTCTCAACCGCCATGCTCTCAACAAGCTGTCCTCCTCTGCCTCTTCATCATTCACCGCCTCCACCAAAGTAGTCGGCGAGCAGTCCGTCCG TTGGATCTCCCGCCAAACCCGATCTATATCCGAACCCCGCCGCTTCTGTCATCCCATCGGCGAAGTCCACCTCAAGGTTTCAACGATACGAGAGAGTCGA TCGGACGACAGGCGGTTCTCAGTGTACACGGGGACATCAAAGCGGCTTCACTTGAGGGCAGAGAGCCCTGAAGACAGGAGAGCTTGGATGGAGGCGCTCA AGGCCGTGAAGGACATGTTCCCTAGGACCGCCATCTCAGACGATGCAGTCGGAACTACTGTCGTCCCCTTTCCGACGGAGAGGCTGAGGCAGAGATTAGC AGAGGAAGGTGTAAGTGAAGAAGCCATACAAGAGAGTGAAGCAATCATGAGGAATGAAATTTCAGCTCTTACTGAACATGTCCATATCCTCAACCAGAAG CAGGTAGAGAAAGTAGACTTGGAGCACACCATTGTTAACGAAAGCAGAAACATTTCCAAAAAACACACGGTCAAACCAAACGGAAGTGACTCGGACGATG ACAAAAATGAAGGCGGGGAAGAAGATCAGCAGACGAAGGAGGAAGATGAAGAGGACGAATTTTTCGATACCCGAGATTTTCTTCCGTGGACAGGGTCCTT CGGTAGTAGTCATGACAACGGTGACTTACAGTCAATGCAGTCAGATAATGATGATTCCTCGGATGAGTCGAGTGGTGGTAGGAACAATAATAATAATAAG TATGCGTACGTGAAAAGGCGAAAGAAGTTGCCGGAGCCGGCCGAGAAGGAGAAGGCAGTTAGCTTGTGGTCGATGATTAAAGACAACATAGGGAAGGATT TGGGGAAGATATGTCTGCCAGTATATTTTAACGAGCCAATTTCTTCTCTTCAGAAGTGTTTTGAAGATCTTGAATACTCCTACCTATTGGATCGAGCTAA TGAACGGGGTAAGAAGGACGATAGCCTCATGAGGATACTAAATGTGGCGGCATTTGCGGTATCAGGGTATGCTTCCACTAACGGGAGACTGTGTAAGCCC TTCAACCCGTTGTTGGGTGAGACGTACGAGGCCGATTTTCCAGATAAAGGTGTACGATTTATCTCTGAAAAGGTAAGCCATCATCCAATGGTGGTGGCGT GCCATTGTGAAGGTGAAGGTTGGAAGATGTGGGGGGACAGTAATTTGAAAAGCAAGTTCTGGGGGAGGTCGATTCAGATAGACCCTGTTGGTGTATTGTC GTTGGAGTTTGGTGATGGAGAAGTTTACCACTGGAGTAAGGTAACAACGTCGATTTACAACCTGATACTGGGGAAAATATACTGCGATCACCACGGGACA ATGAAAATAGAAGGGAATGGGAAATATAGCTGCAAGCTCAAGTTCAAGGAGCACTCTATGATGGATAGGAACCCTCACCAGGTTCAAGGGATTGTTGAAG AGAAGAGCAGTGGTAAAACAGTGGCGACATTGCTAGGGAAATGGGACGACAGCATGCACTACATCGAGAAATTGCCGCCAACAGACTCGAGACTGAGACC GGACCAGAGATGTTTGGAGAAGGGACAATATGAGATGGCCGACGTTGAGAAGTTGCGACTAGAGCAGAGGCAACGACAGGCGAGGAAGATGCAAGAGAGC GGGTGGAAGCCAAGGTGGTTTGCAAAGGAGAAATTAGAGAATGGTAATAACGACACATATCGATACAGTGGTGGTTATTGGGAGGCCAGGGAGAATGGAA CATGGGATTCATGTCCCACCATTTTTGGCTAA
AA sequence Show only first row Show all	>Lus10035967 pacid=23141143 polypeptide=Lus10035967 locus=Lus10035967.g ID=Lus10035967.BGIv1.0 annot-version=v1.0 MQDPQQIPLMQLLDHDNHSPHYIPMASFRSLDHSRSANSFRPHRDYQSNNNNNYNNTNNNNNINNRRSLDYKSASMYSIRDQDVDYGGSVTTASGVVSGI LQKWVNYGRGWRPRWFILQDGVLSYYKIHGKGQHNITLNRHALNKLSSSASSSFTASTKVVGEQSVRWISRQTRSISEPRRFCHPIGEVHLKVSTIRESR SDDRRFSVYTGTSKRLHLRAESPEDRRAWMEALKAVKDMFPRTAISDDAVGTTVVPFPTERLRQRLAEEGVSEEAIQESEAIMRNEISALTEHVHILNQK QVEKVDLEHTIVNESRNISKKHTVKPNGSDSDDDKNEGGEEDQQTKEEDEEDEFFDTRDFLPWTGSFGSSHDNGDLQSMQSDNDDSSDESSGGRNNNNNK YAYVKRRKKLPEPAEKEKAVSLWSMIKDNIGKDLGKICLPVYFNEPISSLQKCFEDLEYSYLLDRANERGKKDDSLMRILNVAAFAVSGYASTNGRLCKP FNPLLGETYEADFPDKGVRFISEKVSHHPMVVACHCEGEGWKMWGDSNLKSKFWGRSIQIDPVGVLSLEFGDGEVYHWSKVTTSIYNLILGKIYCDHHGT MKIEGNGKYSCKLKFKEHSMMDRNPHQVQGIVEEKSSGKTVATLLGKWDDSMHYIEKLPPTDSRLRPDQRCLEKGQYEMADVEKLRLEQRQRQARKMQES GWKPRWFAKEKLENGNNDTYRYSGGYWEARENGTWDSCPTIFG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Lus10035967 [exp]	0	1
					Lus10004450 [exp]	9.3	0.8550
					Lus10013906 [exp]	11.4	0.7904
AT2G43590			Chitinase family protein (.1)		Lus10035618 [exp]	15.5	0.7590
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Lus10007751 [exp]	30.1	0.7910
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10026372 [exp]	30.9	0.7342
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10035807 [exp]	41.0	0.7972
					Lus10005025 [exp]	100.7	0.7565
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10010022 [exp]	207.5	0.7260
AT4G22310			Uncharacterised protein family...		Lus10032564 [exp]	219.0	0.7238

Compare expression of checked genes

Lus10035967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.