Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21060 732 / 0 RBL RbBP5 LIKE, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 62 / 5e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50230 53 / 5e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT2G01470 50 / 2e-06 ATSEC12, STL2P SEC12P-like 2 protein (.1) AT3G49660 49 / 4e-06 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G10580 50 / 5e-06 Transducin/WD40 repeat-like superfamily protein (.1) AT2G25420 49 / 1e-05 transducin family protein / WD-40 repeat family protein (.1) AT5G56130 48 / 1e-05 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50650 47 / 4e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50550 47 / 4e-05 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025693 [exp] 1078 / 0 AT3G21060 738 / 0.0 RbBP5 LIKE, Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 57 / 2e-08 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 54 / 2e-07 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 50 / 3e-06 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10001717 [exp] 45 / 0.0002 AT3G05090 1085 / 0.0 LATERAL ROOT STIMULATOR 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10006916 [exp] 44 / 0.0002 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 44 / 0.0002 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004142 [exp] 43 / 0.0006 AT3G05090 1091 / 0.0 LATERAL ROOT STIMULATOR 1, Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G000900 [exp] 827 / 0 AT3G21060 741 / 0.0 RbBP5 LIKE, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G305500 [exp] 825 / 0 AT3G21060 757 / 0.0 RbBP5 LIKE, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 66 / 2e-11 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 56 / 3e-08 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 56 / 4e-08 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 50 / 2e-06 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 47 / 2e-05 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G087200 [exp] 43 / 0.0004 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.005G144400 [exp] 43 / 0.0005 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.005G206600 [exp] 43 / 0.0005 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10035969 pacid=23141242 polypeptide=Lus10035969 locus=Lus10035969.g ID=Lus10035969.BGIv1.0 annot-version=v1.0 ATGAACGCTCCGATTATTGATCCGTTGCAAGGAGATTTCCCTGAGGTAATAGAGGAGTATTTGGAGCATGGGGTTATGAAATGCATCGCCTTCAACCGCC GTGGAACTCTTCTTGCCGCTGGATGTGTTGATGGAAGTTGTGTCATTTGGGATTTTGAGACAAGGGGAATTGCCAAGGAGCTTCGGGATAAAGACTGTGT TGCACCTATAACATGTGTATGCTGGTCAAAATGTGGGCATCGGATCCTTGTGTCTGCTGCTGACAAATCGCTGACTCTTTGGGATGTTGTCTCTGGCGAG AAGATCACACGAACAGTACTGGAGCAAACATCACTATTAGCTCGTCTACATCCTGCTTCTTCTACCCCCTCAATGTGTTTGGTATGTCCACTCTCTTCTG CTCCTATGGTTGTTGATTTAGAAACGGGTACCACAACTGTACTTCCAGTGACAGTACAAGACATGGGCGATGATACTGCCCCTCCCCGAAATAAATCTTC AGACACAACTCCTCATTTCACTCCAACTGCAGCATGCTTTAACAAGTATGGTGATCTGATTTATGTTGGTAACTCCAAAGGAGAGATACTTATAATAGAT TATAGAAGTGTTAAAGTTCACGCTGTGATTCCTATTTCAACTGGTGCTGTAATCAAGAACATTGCGTTCAGCAGAAATGGGCAGTATCTTCTTACAAACT CGAACGATCGGATAATCAGGATATTCGAAAACCTTCTACCTCAGAAAGGTGGATTGATTGCCGTTGAGGACCTGGTTAAGACGATTGAGGTCGAGGAGAG CATGGAGAAGCTAAAAGCTGTTGGATTAAAGTGTTTGGCACTTGTTCGGGAGTTTCAAGACACAATCACAAAGATGCACTGGAAAGCACCTTGTTTCAGT GGTGATGGAGATTGGGTAATCGCTGGTTCTGCAAGCAAAGGAGAGCACAAAATCTACATCTGGGATAAAGCTGGATATCTGGTTAAGATCCTTGAAGGTC CCAAAGAAGCTTTGATTGATTTGGCATGGCATCCCATCCATCCAATTGTAGTCTCAGTCTCCTTAGCCGGATTTGTTTATATATGGGCGAAGGATTACAC AGAGAACTGGAGTGCATTTGCTCCAGACTTCAAAGAGCTGGAGGAGAATGAAGAGTATGTGGAACGAGAAGATGAATTTGACCTGATGCCTGATACTGAA AAGGTGAAAAAATCAGATGCAAATGAAGATGAAGAGGTTGACATTATGACAGTAGAGAAAGATGCATTCAGTGATTCAGATATGTCAGCGGAAGAACTGT GTTTCCTGCCAGCCATCCCATGTCCAGATGCTCAGGAGAAACAGGACAAGTGTGCAGGAAGCTCTTCAAAGCTGGTAGAGAGTAATCATTCTGGATCTCC AATTTCTGAAGATGCTGGACAGGACAGGCAAGCAGCAGATCATACATCAAGTCCTCATGAAGAGGACAGCAGTGCGGCGAGGTTGAAGAGGAGAAGAAAA CCATCGGAGAAAGGGTTAGAGATGCAAGCAGAGAAGGTGAAGAAACCGGCCAAGGCATTGAAGACGAGTGGTAGTGGTGGTAAAATGTCAAGACCAAGTA ACAAGAGTGTTGGTGGTGGGGATGTAGTAGAAGCAAGCAATGGTGTAAATGGAGGCGATGTATCAGATGAGTATCATTAG
AA sequence Show only first row Show all	>Lus10035969 pacid=23141242 polypeptide=Lus10035969 locus=Lus10035969.g ID=Lus10035969.BGIv1.0 annot-version=v1.0 MNAPIIDPLQGDFPEVIEEYLEHGVMKCIAFNRRGTLLAAGCVDGSCVIWDFETRGIAKELRDKDCVAPITCVCWSKCGHRILVSAADKSLTLWDVVSGE KITRTVLEQTSLLARLHPASSTPSMCLVCPLSSAPMVVDLETGTTTVLPVTVQDMGDDTAPPRNKSSDTTPHFTPTAACFNKYGDLIYVGNSKGEILIID YRSVKVHAVIPISTGAVIKNIAFSRNGQYLLTNSNDRIIRIFENLLPQKGGLIAVEDLVKTIEVEESMEKLKAVGLKCLALVREFQDTITKMHWKAPCFS GDGDWVIAGSASKGEHKIYIWDKAGYLVKILEGPKEALIDLAWHPIHPIVVSVSLAGFVYIWAKDYTENWSAFAPDFKELEENEEYVEREDEFDLMPDTE KVKKSDANEDEEVDIMTVEKDAFSDSDMSAEELCFLPAIPCPDAQEKQDKCAGSSSKLVESNHSGSPISEDAGQDRQAADHTSSPHEEDSSAARLKRRRK PSEKGLEMQAEKVKKPAKALKTSGSGGKMSRPSNKSVGGGDVVEASNGVNGGDVSDEYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21060		RBL	RbBP5 LIKE, Transducin/WD40 re...		Lus10035969 [exp]	0	1
AT5G58480			O-Glycosyl hydrolases family 1...		Lus10042269 [exp]	1.0	0.9629
AT5G57590		BIO1	biotin auxotroph 1, adenosylme...		Lus10003630 [exp]	4.2	0.9332
AT5G01420			Glutaredoxin family protein (....		Lus10017547 [exp]	4.5	0.9359
AT5G58480			O-Glycosyl hydrolases family 1...		Lus10026387 [exp]	6.2	0.9163
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10016274 [exp]	7.5	0.9321
AT2G35540			DNAJ heat shock N-terminal dom...		Lus10027316 [exp]	7.5	0.8918
AT3G26782			Tetratricopeptide repeat (TPR)...		Lus10031989 [exp]	9.3	0.8980
AT4G18820			AAA-type ATPase family protein...		Lus10005422 [exp]	11.0	0.9214
AT4G16490			ARM repeat superfamily protein...		Lus10014691 [exp]	19.3	0.9086
AT3G15140			Polynucleotidyl transferase, r...		Lus10009194 [exp]	19.6	0.9029

Compare expression of checked genes

Lus10035969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.