Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38290 0 / 1 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041851 [exp] 74 / 9e-15 AT2G38290 430 / 2e-149 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10020248 [exp] 74 / 1e-14 AT2G38290 481 / 7e-167 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10028397 [exp] 74 / 1e-14 AT2G38290 481 / 6e-168 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10003394 [exp] 63 / 6e-12 AT2G38290 197 / 5e-63 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10002208 [exp] 50 / 1e-06 AT2G38290 572 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10012240 [exp] 42 / 0.0004 AT2G38290 469 / 5e-165 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024186 [exp] 0 / 1 AT2G38290 540 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10001776 [exp] 0 / 1 AT2G38290 503 / 3e-175 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10014713 [exp] 0 / 1 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G023022 [exp] 121 / 5e-31 AT2G38290 572 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G102800 [exp] 112 / 4e-28 AT2G38290 664 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G247800 [exp] 75 / 5e-15 AT2G38290 462 / 1e-160 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G216000 [exp] 73 / 3e-14 AT2G38290 528 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.002G047000 [exp] 0 / 1 AT2G38290 511 / 1e-179 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.018G033500 [exp] 0 / 1 AT2G38290 525 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.013G040401 [exp] 0 / 1 AT2G38290 471 / 1e-163 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G106000 [exp] 0 / 1 AT2G38290 516 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.016G121400 [exp] 0 / 1 AT2G38290 648 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G023012 [exp] 0 / 1 AT2G38290 567 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [flax] [poplar] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Lus10035970 pacid=23141216 polypeptide=Lus10035970 locus=Lus10035970.g ID=Lus10035970.BGIv1.0 annot-version=v1.0 ATGTCACTGGGGAGTGAAAGCTGGAAGGAAAGTCGATTGCGAATTCGAGAAAACCGGCTCCAGGAGAATCAATTGAACCGGGTCCTTTTCCCTGACTTAA TTCGAATAAAGTATGAGAGGAAGGAAGGAAGGATGATCAGAGAAGAGCAATGCTGGCATGCTGCTGAGGCAAGAGTAAGAGCACTAATAACAAGGACAGC GACAGGCGGCGGCTGTTACCAGCGACGGGTGACACAGGCTGATGTTGGGACGATAGCAGTGAAACCGGAGATAGGCCTTCTGTTCATATCTTATCTACGT TGGAATGGGATGGGATGGGATGGGATGGGCCGGGTTGAACGGTGGAGACCCGTATACTGCAAACTTGGACTCCGTTTCCGTCCTGAACACAAACATATGC GCCGCCACAAGCCTGCTAGTATGGACATGGCTGGATGTCATCTTCTTCCACAAGCCTTCCGTCATTGGGGCCGTCCAGGGCATGATCACCGGTCTCGTCT GCATTGCCCCCGCCGCCGATACCATTACCACCACCAATTTTTTTGTTCAGGAGTGGTGGAAGGATGGGCAGCGATAGTAATGGGGATAGCACCAGGGAGC GTGCCATGGTTCACAATGATGATCGTACACAAAAGGTGGAGCTTCCTTGAGAAGATAGACGATACCCTAGGCGTATTCCACAATCAAGCCGTAGTGGGCC TCCTTGGTGGGCTACTAACGGGCCTTTTGGCTGAGCCCACGCTTTGCTCCCTCTTCCTCCCCGTGACAAACTCCAGGGGAGCTTTCTACGGCGGCGGAGG AATGCAGCTCATCAAGCAGCTTGTCGGCGGTGGATCCATCATCCTCTGGAACGTGGTTATCACCTCCATCATTCGTTCAGTAACCATTATGTAG
AA sequence Show only first row Show all	>Lus10035970 pacid=23141216 polypeptide=Lus10035970 locus=Lus10035970.g ID=Lus10035970.BGIv1.0 annot-version=v1.0 MSLGSESWKESRLRIRENRLQENQLNRVLFPDLIRIKYERKEGRMIREEQCWHAAEARVRALITRTATGGGCYQRRVTQADVGTIAVKPEIGLLFISYLR WNGMGWDGMGRVERWRPVYCKLGLRFRPEHKHMRRHKPASMDMAGCHLLPQAFRHWGRPGHDHRSRLHCPRRRYHYHHQFFCSGVVEGWAAIVMGIAPGS VPWFTMMIVHKRWSFLEKIDDTLGVFHNQAVVGLLGGLLTGLLAEPTLCSLFLPVTNSRGAFYGGGGMQLIKQLVGGGSIILWNVVITSIIRSVTIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10035970 [exp]	0	1
AT1G51160			SNARE-like superfamily protein...		Lus10039298 [exp]	3.7	0.8654
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007588 [exp]	14.5	0.7736
AT3G47570			Leucine-rich repeat protein ki...		Lus10033362 [exp]	17.3	0.7523
AT3G09730			unknown protein		Lus10015071 [exp]	26.7	0.7953
AT5G05340			Peroxidase superfamily protein...		Lus10009935 [exp]	44.4	0.7857
AT2G40390			unknown protein		Lus10017423 [exp]	56.1	0.7422
AT5G07040			RING/U-box superfamily protein...		Lus10005389 [exp]	73.0	0.7346
AT1G08590			Leucine-rich receptor-like pro...		Lus10027951 [exp]	73.5	0.7262
AT5G35700		FIM2, FIM5	FIMBRIN5, fimbrin-like protein...		Lus10006407 [exp]	78.6	0.7625
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Lus10029494 [exp]	98.1	0.7536

Compare expression of checked genes

Lus10035970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.