Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68150 174 / 4e-50 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1) AT1G18860 153 / 2e-41 WRKY ATWRKY61, WRKY61 WRKY DNA-binding protein 61 (.1) AT5G15130 152 / 1e-40 WRKY ATWRKY72, WRKY72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) AT4G04450 151 / 2e-40 WRKY ATWRKY42, WRKY42 WRKY family transcription factor (.1) AT1G62300 149 / 1e-39 WRKY ATWRKY6, WRKY6 WRKY family transcription factor (.1) AT4G22070 149 / 2e-39 WRKY ATWRKY31, WRKY31 WRKY DNA-binding protein 31 (.1) AT4G01720 148 / 2e-39 WRKY ATWRKY47, WRKY47 WRKY family transcription factor (.1) AT1G69810 118 / 3e-29 WRKY ATWRKY36, WRKY36 WRKY DNA-binding protein 36 (.1) AT4G31800 102 / 5e-24 WRKY ATWRKY18, WRKY18 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2) AT2G04880 102 / 3e-23 WRKY ATWRKY1, ZAP1 zinc-dependent activator protein-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016682 [exp] 430 / 4e-148 AT1G68150 194 / 2e-57 WRKY DNA-binding protein 9 (.1) Lus10021554 [exp] 155 / 2e-41 AT1G62300 293 / 1e-92 WRKY family transcription factor (.1) Lus10023615 [exp] 154 / 6e-41 AT5G15130 244 / 1e-73 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10022959 [exp] 153 / 7e-41 AT1G62300 300 / 3e-95 WRKY family transcription factor (.1) Lus10024246 [exp] 154 / 2e-40 AT5G15130 257 / 2e-76 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10035286 [exp] 151 / 3e-40 AT1G62300 324 / 2e-104 WRKY family transcription factor (.1) Lus10015546 [exp] 144 / 4e-39 AT4G04450 264 / 5e-84 WRKY family transcription factor (.1) Lus10037205 [exp] 142 / 3e-37 AT5G15130 225 / 2e-67 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10036725 [exp] 141 / 5e-37 AT5G15130 227 / 6e-68 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G208600 [exp] 183 / 3e-52 AT1G68150 210 / 5e-63 WRKY DNA-binding protein 9 (.1) Potri.015G064100 [exp] 157 / 6e-42 AT5G15130 244 / 1e-72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.014G155100 [exp] 151 / 8e-40 AT1G62300 310 / 6e-98 WRKY family transcription factor (.1) Potri.002G228400 [exp] 150 / 2e-39 AT1G62300 337 / 2e-108 WRKY family transcription factor (.1) Potri.017G079500 [exp] 147 / 5e-39 AT5G15130 284 / 6e-89 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.014G111900 [exp] 147 / 6e-39 AT4G01720 298 / 1e-95 WRKY family transcription factor (.1) Potri.002G186600 [exp] 146 / 8e-39 AT4G01720 281 / 4e-89 WRKY family transcription factor (.1) Potri.011G007800 [exp] 147 / 1e-38 AT1G62300 391 / 1e-129 WRKY family transcription factor (.1) Potri.004G007500 [exp] 147 / 1e-38 AT4G04450 419 / 8e-141 WRKY family transcription factor (.1) Potri.002G221600 [exp] 106 / 2e-25 AT2G04880 255 / 3e-81 zinc-dependent activator protein-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10035971 pacid=23140981 polypeptide=Lus10035971 locus=Lus10035971.g ID=Lus10035971.BGIv1.0 annot-version=v1.0 ATGGAATTAGAAGATCGCCAGCAGGAGGATGAGGATGAGGATGATGACCAGAATTCCTCCATTGAGTTATCTAGTCTGCAAGATACCAAGAACAAGATGG ATGATCAGCAGTTGTGTGGTTTGGAGATGGAGATGAGACGAATGAAAGAGGAGAACAGATTGTTGAGGGAAGTAGTTGAGAAGACTGCCAAAGATTACTA CCGCCTCCAGATGAAATTGACCCTTCTCCACCAACACAACAATTCTTGCACCGAGGAGGATCCGCAGTTATACCTGTCCCTTGGTGAGAAAGTAGTAGTT GACGACGACGAAGAAGAAGCAGTTAATACCAAGTTGAAAAGAAGAGCAATAGATGATGATGATGATGATGAATTGGGACTTTCATTGAAGCTCCAAACAA CACCTCTAAGTCATCATCAGATTCAGCACCAACAAGACAAAGATAATTATAAAGTAGTAGACAGTAGCAGTAGTAGAGGTATGAATTACAGTGGAAAGAG TAGTACTATTGTTTCCAATAAGCTTCAGAGGATCAACCATGATCAGCCACATCATCATACTGATGTTGATCTATTATCTCCTACTAATCATTCCATTAAT GCTGCTCATCTTTCTGCTACTACTTCTCCTTCCTCTCCACCCAACCGGAAAGCTAGGGTTTCTGTCAGAGCCAGATGCCAATACTCAACTATGAATGACG GGGGGCAATGGAGGAAATACGGTCAGAAAATAGCAAAAGGGAATCCATGCCCTCGTGCTTATTATCGCTGCACCGTCGCTAATGGCTGCCCTGTCCGCAA ACAGGTGCAAAGATGCCAAGATGACATGTCAATTCTCATCACAACCTACGAAGGGACCCACAACCATCCCATGCCGCCGGGACCCACCGCCGCCGCAACC TCCTTCATGCTACTCGACTCCTCCGCGGCCGACACTAGTCCGCCGCCGTCGTCGCAGCTCAACCTCTCTGCGGGCCCCACAACTGCAAACTTCATCTTCC CGTTCAACCAACAGTACCAACAAATGACCCAACAGTACCATCAAATGACGTTCAACTCGACCACGAGCACGACCACTCCCGCGGCACATCACTATCCAAC GCTGAATTCCTCATCAATGCACCGAACCACATCCGCGCTGGCAAGATTCAACATCGTCGATGGTGAGCTGGCAGACAACGTCAGCACCGCCATTGCTGCT GATCCTAAATTCAAGGTGGCGGTCGCAGCCGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCTCCCCCC CCACCTGCCACTACTCCCTAATTAAGCACTAA
AA sequence Show only first row Show all	>Lus10035971 pacid=23140981 polypeptide=Lus10035971 locus=Lus10035971.g ID=Lus10035971.BGIv1.0 annot-version=v1.0 MELEDRQQEDEDEDDDQNSSIELSSLQDTKNKMDDQQLCGLEMEMRRMKEENRLLREVVEKTAKDYYRLQMKLTLLHQHNNSCTEEDPQLYLSLGEKVVV DDDEEEAVNTKLKRRAIDDDDDDELGLSLKLQTTPLSHHQIQHQQDKDNYKVVDSSSSRGMNYSGKSSTIVSNKLQRINHDQPHHHTDVDLLSPTNHSIN AAHLSATTSPSSPPNRKARVSVRARCQYSTMNDGGQWRKYGQKIAKGNPCPRAYYRCTVANGCPVRKQVQRCQDDMSILITTYEGTHNHPMPPGPTAAAT SFMLLDSSAADTSPPPSSQLNLSAGPTTANFIFPFNQQYQQMTQQYHQMTFNSTTSTTTPAAHHYPTLNSSSMHRTTSALARFNIVDGELADNVSTAIAA DPKFKVAVAAAXXXXXXXXXXXXXXXXXXXSSPPTCHYSLIKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10035971 [exp]	0	1
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001637 [exp]	1.4	0.9881
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027426 [exp]	2.0	0.9817
AT1G53130		GRI	GRIM REAPER, Stigma-specific S...		Lus10005544 [exp]	3.0	0.9788
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10009992 [exp]	3.9	0.9741
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10001429 [exp]	5.3	0.9781
AT2G44380			Cysteine/Histidine-rich C1 dom...		Lus10003919 [exp]	5.5	0.9721
AT2G43870			Pectin lyase-like superfamily ...		Lus10002124 [exp]	6.3	0.9674
AT3G60870	AT-hook	AHL18	AT-hook motif nuclear-localize...		Lus10009301 [exp]	6.5	0.9699
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Lus10039153 [exp]	7.4	0.9661
					Lus10025963 [exp]	8.5	0.9601

Compare expression of checked genes

Lus10035971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.