Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55325 313 / 6e-98 MAB2, GCT MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016683 [exp] 372 / 5e-122 AT1G55325 1302 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10035973 [exp] 118 / 3e-30 AT1G55325 1843 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G220800 [exp] 332 / 9e-105 AT1G55325 2185 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Potri.001G004200 [exp] 328 / 2e-103 AT1G55325 2185 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035972 pacid=23141052 polypeptide=Lus10035972 locus=Lus10035972.g ID=Lus10035972.BGIv1.0 annot-version=v1.0 ATGAAAGGTGGTTTAGCACAACCTTCAGGAAGAAAGCAGCTCATGAGCGGGCACACAGCAGTTGATAGCACCAAGGGAATACTTCAGTGGGTACAGAGCA TCACTTTTGTGGCAATTTCTATCGATCATTCGTTGCATCTGGTTTGTCAGGCAGAGTCGTCTTCACCTGGTGTTAACAATGTGCCTGGATCAGGATATGT GGAAGGTTTCAGTCCGGTGAAGCCTCCGAGTTCAACCTCTGCATCTTACCTTCTAATTCCGTCGTCGGGCATGCGTTTCCTCCCTTCAAACCCACTTCAG CTTCCTACTTGCCTCACTGCAGAATCGCCGCCACTGGCTCATCTCCTCCACAGTAAGGGCTCTGCTATCCCCCTTTCAACCGGTTTTGTCATATCGAAAG CAGTGCCTTCTGTGAGGAAAGACCTCAGAAGCAACTCTAGGGATGAGTGGCCTTCAGTGCTCTCGGTGAGTCTCATTGACTCGTACGGAGGAAATAGTAA CATATCAGCAGCAGACAAAATCGGTACTAGGAGTAATGAGACGGAGACCAACTTGATTCTTGGGACTGTGGCAGCTGAACTCCACGCCTTATCATGGATG ACAATCAGCCCAGCATATTTGGAGAGACGTTCAGCACTGCCACTCCATTGCGACATGGTTTTGAGACTTAGAAGACTGCTTCATTTTGCAGATAAAGAGC TATCGTCGCAACCAGATAAGGCATAG
AA sequence Show only first row Show all	>Lus10035972 pacid=23141052 polypeptide=Lus10035972 locus=Lus10035972.g ID=Lus10035972.BGIv1.0 annot-version=v1.0 MKGGLAQPSGRKQLMSGHTAVDSTKGILQWVQSITFVAISIDHSLHLVCQAESSSPGVNNVPGSGYVEGFSPVKPPSSTSASYLLIPSSGMRFLPSNPLQ LPTCLTAESPPLAHLLHSKGSAIPLSTGFVISKAVPSVRKDLRSNSRDEWPSVLSVSLIDSYGGNSNISAADKIGTRSNETETNLILGTVAAELHALSWM TISPAYLERRSALPLHCDMVLRLRRLLHFADKELSSQPDKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035972 [exp]	0	1
AT5G66040		STR16	sulfurtransferase protein 16 (...		Lus10012566 [exp]	3.2	0.8933
					Lus10011007 [exp]	6.7	0.8820
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10033770 [exp]	7.2	0.8855
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10028655 [exp]	7.5	0.8834
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Lus10024295 [exp]	12.0	0.8697
AT5G44280		ATRING1A	ARABIDOPSIS THALIANA RING 1A, ...		Lus10039845 [exp]	14.6	0.8831
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10030169 [exp]	17.6	0.8396
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	18.0	0.8712
AT5G14290			Mitochondrial ribosomal protei...		Lus10041583 [exp]	19.3	0.8733
AT2G43370			RNA-binding (RRM/RBD/RNP motif...		Lus10027015 [exp]	21.0	0.8383

Compare expression of checked genes

Lus10035972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.