Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55325 1575 / 0 MAB2, GCT MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016683 [exp] 1500 / 0 AT1G55325 1302 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10016684 [exp] 1161 / 0 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10035972 [exp] 119 / 2e-29 AT1G55325 313 / 5e-98 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G220800 [exp] 2002 / 0 AT1G55325 2185 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Potri.001G004200 [exp] 1968 / 0 AT1G55325 2185 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035973 pacid=23141178 polypeptide=Lus10035973 locus=Lus10035973.g ID=Lus10035973.BGIv1.0 annot-version=v1.0 ATGTGGTTGGTGCTTTCATCCCATTTGCAGTTGCAGAAGGGGGGATTTCTGAGTACATGGACCAATTCTTTTGTTGGACCTTGGGATCCATCTCAAGGTC TTCACAATCCAGATGAGAAAATCAAGCTTTGGCTTTTTCTCCCCGGGCGGCATTCTTCTGTTGTTGAGAGAGCTCAGTCAGCAGTTGCTAAATTAAGAGT TGTCGCATCTGGAAGTTGGGTGGCACCTGGGGATTCTGAAGAGGTTTCTTCTGCACTTTCTCAGTCTTTAAGGAATCGCATTGAAAAGGCACTTCTTGGA GTGTCTTACATGAGATATGGAGACGTATTTTCAAAGCATCGTCCATGTCAAACTGAACCACTTTACAGGTTAGGAATCTCCCCTCCCAGGAGAGGACAGC CTACTATTGAATTCGTGTTTGCAGCCACTGAAGAAGCTATTTTTGTCCATGTTATAATATCTGCAAAGCATATTCGCATGCTTTCAGCTGGTGATATGGA AAGTGTGTTGAAGCACTCATCTAAAGATTCTAGCTACAGACTTCCAGTCATCGTTTCTCCTCATGGAATACGTGGCTGGGTTACAGGATGTTGTCCAAAT GATGTTGTCAAGCAAGTCTATGCAAGTGCACACTACCACAGTTTGATTAGTGTTCACCTATGCCCTTGTATTCCTTCTCTCCTTAACAGTTCTGGCAACT CTAGGATGCAAGATGGTTTTATTGCTTCACTAAAGGATGTCTCTCAAGGGCCTGCTTTCCAGTCGAGGGGGCAGCATTTATATGTTGAAGTTGCACTTGG TTGCCCAAGATATGAGAGTAGCAAGTCAATGCAATTGGGCTCCAGTTCAGGTAAGAATCTACAAAAAAACCATGCAGCAGAATCTCCAGCTGTGGCAAGA GGCGATCACAGTGGTTTACAAGATCACCCCTCTGTGAATGAGAAGATATTCATCTATCCGGTTGAGGCTGTTGCTGTCCCACTTTTACACACCTCATTTG CTCGGTCTTCTCTCAGACGATTTTGGTTACAAAATTGGGCAGGGCCATCAATGTCCGGTGCAGCTTTCTTTATGCATTGTGGAGCTAATATAGACAATGC AGATGGTTCTTGGCTTGACTCTGGCGGAGCACTTGTGCACCATGGCTACAACAGTAGTAGCAATAGTAACAATAGTAGCATCAGCTTGATCAGCAACAGC TCTAGTGATAGTGATTATAATATGGCCACAGATGGAGGGGACCTAGATGCAGATGCAGATTCGTTGTCATGCAGGCGATCTGGTTTGTCTTCAAATGATC ATCTGGAAAATGATCTCCATAAACTGGGTTCTAAGCGTACTCGGGCAGGAATGGAATCGTTTGGTCAGTTAGGTAGAGCTAAAAGTGCTTCTATTCAAGA AGCTTACAAGTCTGATTTGGGGTCCATTGAGGTTAACACTTCAGCTATCACCGGCGTTGCAAATGAACAGAGTGGGTCTCCTTGGGATTGGGATGACGAG AGAGGTATGGGCATGGATATTCAAGCTCTACTTTCCGAGTTTGGTGATTTCGGTGACTTCTTTGAGAATGATGCTTTGCCTTTTGGAGAGCCACCCGGAA CTGCAGAGTCGGAAGCTCTAATGTTTTCAGGTCCAGATGTTGGAGAAGTTGGCAGCAGTCCCATTGGGTCAATGGATGTTGATCAAATGGTTTTACCTGT TGGTCTTCCGTCTTTCGATAGCTTTAATCTGCCTCCTTCAGTAACCATGGATGAGTGTGTGAGCAAAAATGAAGAAATGACTCACGGCGGTGTGAGTACA AGCTCAACAAATTCTGCTGCGCCCTCTTCCACGGGCGAATTTGATCATTTAATAAAGGCTGAAGCTCTTATGACCTTTGCTTCAGAGTATGGAGCAGTTG AAACAGCAACTAGCGAGCTCTCCTCCTCAATCTTCAAAAGGCCATATTGTCCCAAGTCTCGTAGTATAGAGAGCTCAAATTCAAGCAATTACGCATATGG TGCAACTCCTCCCCTTTCTCCTTGTTTTGATGGGTTAGATGAGAACACTACTAGGCATGTTAACCTAAAAGCAGGTACTGGAAGAAGGGACACAAGAAAG TTTTACTCTTACGTTGAAGCTAGTAGAGAGCAACATGATAAAAAGTCATTAAGGGGTGAGGGAAACCACGTTGCTGGCGAGCGTTTTGCACAATCTTCGT TGTCAACTTTGAGCTCTTCAACCGCTGTTAATTCCATGCAGCGGAAGGTGAATGAGAATGTGGTAGGAGCAGAGAGTTTATTGCTTTTTACGAAGACTGT ATTGGCAACTGAAGTTGAATGCATCTTGTTTCAAGCCTTAATGTGTAGAGTACGACATACATTGTTGTCTAATCCAGTACCTATAAACTTGAGTAGAGCA AATGGAGGTAATTTGAGTCAGTTACCTGGCGATACAAGTGGCATGACGGACAATATCTCTAGTAGGTATGAAATAAAAAAGAAGGAATCTATACCAGTTC GAATAGCTGGTGATGTTGATGGGGGTGTGCTAGATGGTCACCTCAATGCACCTGTTGGTGTTTGGCGCACTGTGGGCGGCCCAAAACCTACAAGGTCTTC AAGTATCGAAATTAGTCCATCCTTGTCCCATCATTCACTCAGCGAGGAAGGAATGCTTTCTTATGGGCAAAGGCATCCGCTGCAGGAGCTTCTTGACAGC ATGGTCTTACTTGTGCAACAAGCTACTTCTATCGTTGACCTGGCTCTAGATTCAGATTGTGGTGATGGTCCCTATGGTTGGCTTGCATTACAAGAACACT GGAGACGTGGTTTTTGTTGTGGTCCTTCTATGGTTCATGCAGGCTGTGGAGGAACCTTGTCTGCTTCTCATTCCTTAGACATTGCTGGCACAGAGTTAGT AGATCCACTCTCTGCAGATATTCATGCGTCTTCTGTAAGTAGTTTACTGCATACTGAAATTAAAGCAGCCTTAAAGTCTGCATTTGGGAATTTGGATGGC CCATTGTCAGCTGCTGACTGGTGCACTGGCCGCAGCTTCTCTAGTGGTGGTTCAACTATATGTGATGGATCAGTAATTGATTCTACTCTAAGTGAAGCTA GAGATTGTTCCAGTTCTTTTTCTCTATCCATGGGAGAACCGATGAGTCCAGCTCAATCTTCTGCTGGTGGATCATCTAGTCTTAGAGGTGCAGTGGATGG AATAAAGTTGGATGATACAGTGCAGATGCGACTAAACCAAGATACTGAGATTGATCCGAGCTACAGGATAAGACCAACACTCTATGTTCTTCCATCACCT TCTATACTTGTCGGGTACCAGGACGACTGGCTGAAGACAGCACCAAGCTCATTACAACTTTGGGAAAAGGCTCCTTTTGAACCATATGCTTCTCCAAAAC CAATTACATATTATGTTGTCTGCCCCGACATTGATTCCCTTACATCTGCTGCTGCTGATTTTTTCCAACAGCTTGGAACTGTTTACGAAGCATGCAAGCT AGGGACACATTCACCTCAGAATTTGGGAAACCAGATGGAAACCCAACGAGGAAAATATTTGTCTTCTGGGTTTGTGTTACTCGACTGCCCTCAGTCAATG AAGATAGAAAGCAGCAATGCGTCTCTCGTGGGGTCAATAAGTGACTACTTTCTTTCTCTCTCCAATGGTTGGGATTTGACCAGTTATCTGAAGTCTCTTT CGAAGTCTATTAAATCTTTGAAACTTGGTACAAGCTTGCCAGGACATCCAAAAGAAGGAAATAGCAGTTCTTGTACGGTTATCTATGTGGTCTGTCCTTT CCCAGAACCTACTGCGGTTTTACAAACTGTAGTTGAATCTTGTGTTGCTCTGGGATCAGTTGCTCTCCCATCAGATAGAGATAGGAGATCTATATTGCAG AATCAGATAGGCAAAGCATTAAGCTGCTTGATGGCAGTTGATGAAGCATCAGCGTCAAATGTTCTGGTACTTCCAGGGTTTAGTCTCCCAAAGTTGGTAT TACAAGTTGTGACTGTGGATTCAATTTTTAAAGTTACTGGTCCATCCCTGAATGAACTTATCATACTTAAGGAGACTGCGTTTGCTGTCTTTAACAAGGC TCGCCGAATCACAAAAGGATCTTCATATAATATTCAGTCATCATCGGTATCTGGCAGGTCTCATTCATCAACGACACCAGTGGTTTCAATTCCATCAATG TGGAAAGACTGCGTCGGCCCTCGAATGGGAGGCCCTCCCCATCCTAGAGAGGGTGACATTGATGCTAGTTTGAGACCTGGGGCTTGGGATAACTCATGGC AGACTATAAGGGCTGGAGGATTGAACTGTGATACAAGCAGAAATGGAGATGTCTCAATTTTAGACGAAACACCCTACATGCTTGAACCACTTTTCATTCT TTCAGAACCTGGATCTCTAGAGCAGGCTGTGGCACCTGCCTTATACAATAATGCAACCACCGACTCTTCAAAAGTTTTGTCTGATGATGGTAATGGGGGC CTCATGCAAAATACAAGCTCATCAGGAAGTGGGAATGCTAGTTCCAGCTCCCAACATGATGGATCTAGCTATCGGAAAGCTCTCCCTAGCCTCCACTGTT GCTATGGATGGACGGAGGATTGGCGATGGCTGGTATGCATATGGACAGATGCAAGAGGAGAACCGCTGGACAGTCAAATATTCCCTTTCGGTGGAATTAG TAGTCGACAGGATACTAAAGGCTTGCAATGCCTTTTTGTGCAAGTCTTGCAGCAGGGATGTCAGTTACTTCAGGGTTGTTCGTCTCCTGATGTTACTGTG AAGCCTCGAGATTTTGTCATTTGTCGAATTGGGAATTTCTTTGAGCTTGAATACCTAGAGTGGCAAAAGGCCATTTATTCTGTTGGGGGAGCAGAGGTGA AGAAATGGCCTGTCCAGCTTCGACGTTCAATACCTGGAAGCTGCAACGGTTCATCATCCTTACAGCAGCAGCAGGAGATAAGTTTGAGTCAAGAGAGAAC ATTACCTTCATCACCTAGTTCTCTGTACAGTCCTCATTCAAAGGCTTCTAATTTCATGAAAGGTGGTTTAGCACAACCTTCAGGAAGAAAGCAGCTCATG AGCGGGCACACAGCAGTTGATAGCACCAAGGGAATACTTCAGTGGGTACAGAGCATCACTTTTGTGGCAATTTCTATCGATCATTCGTTGCATCTGGTTT GTCAGGCAGAGTCGTCTTCACCTGGTGAGATAGCATTTCTTCTCCTTTGTTTAACAGATTCTATATGA
AA sequence Show only first row Show all	>Lus10035973 pacid=23141178 polypeptide=Lus10035973 locus=Lus10035973.g ID=Lus10035973.BGIv1.0 annot-version=v1.0 MWLVLSSHLQLQKGGFLSTWTNSFVGPWDPSQGLHNPDEKIKLWLFLPGRHSSVVERAQSAVAKLRVVASGSWVAPGDSEEVSSALSQSLRNRIEKALLG VSYMRYGDVFSKHRPCQTEPLYRLGISPPRRGQPTIEFVFAATEEAIFVHVIISAKHIRMLSAGDMESVLKHSSKDSSYRLPVIVSPHGIRGWVTGCCPN DVVKQVYASAHYHSLISVHLCPCIPSLLNSSGNSRMQDGFIASLKDVSQGPAFQSRGQHLYVEVALGCPRYESSKSMQLGSSSGKNLQKNHAAESPAVAR GDHSGLQDHPSVNEKIFIYPVEAVAVPLLHTSFARSSLRRFWLQNWAGPSMSGAAFFMHCGANIDNADGSWLDSGGALVHHGYNSSSNSNNSSISLISNS SSDSDYNMATDGGDLDADADSLSCRRSGLSSNDHLENDLHKLGSKRTRAGMESFGQLGRAKSASIQEAYKSDLGSIEVNTSAITGVANEQSGSPWDWDDE RGMGMDIQALLSEFGDFGDFFENDALPFGEPPGTAESEALMFSGPDVGEVGSSPIGSMDVDQMVLPVGLPSFDSFNLPPSVTMDECVSKNEEMTHGGVST SSTNSAAPSSTGEFDHLIKAEALMTFASEYGAVETATSELSSSIFKRPYCPKSRSIESSNSSNYAYGATPPLSPCFDGLDENTTRHVNLKAGTGRRDTRK FYSYVEASREQHDKKSLRGEGNHVAGERFAQSSLSTLSSSTAVNSMQRKVNENVVGAESLLLFTKTVLATEVECILFQALMCRVRHTLLSNPVPINLSRA NGGNLSQLPGDTSGMTDNISSRYEIKKKESIPVRIAGDVDGGVLDGHLNAPVGVWRTVGGPKPTRSSSIEISPSLSHHSLSEEGMLSYGQRHPLQELLDS MVLLVQQATSIVDLALDSDCGDGPYGWLALQEHWRRGFCCGPSMVHAGCGGTLSASHSLDIAGTELVDPLSADIHASSVSSLLHTEIKAALKSAFGNLDG PLSAADWCTGRSFSSGGSTICDGSVIDSTLSEARDCSSSFSLSMGEPMSPAQSSAGGSSSLRGAVDGIKLDDTVQMRLNQDTEIDPSYRIRPTLYVLPSP SILVGYQDDWLKTAPSSLQLWEKAPFEPYASPKPITYYVVCPDIDSLTSAAADFFQQLGTVYEACKLGTHSPQNLGNQMETQRGKYLSSGFVLLDCPQSM KIESSNASLVGSISDYFLSLSNGWDLTSYLKSLSKSIKSLKLGTSLPGHPKEGNSSSCTVIYVVCPFPEPTAVLQTVVESCVALGSVALPSDRDRRSILQ NQIGKALSCLMAVDEASASNVLVLPGFSLPKLVLQVVTVDSIFKVTGPSLNELIILKETAFAVFNKARRITKGSSYNIQSSSVSGRSHSSTTPVVSIPSM WKDCVGPRMGGPPHPREGDIDASLRPGAWDNSWQTIRAGGLNCDTSRNGDVSILDETPYMLEPLFILSEPGSLEQAVAPALYNNATTDSSKVLSDDGNGG LMQNTSSSGSGNASSSSQHDGSSYRKALPSLHCCYGWTEDWRWLVCIWTDARGEPLDSQIFPFGGISSRQDTKGLQCLFVQVLQQGCQLLQGCSSPDVTV KPRDFVICRIGNFFELEYLEWQKAIYSVGGAEVKKWPVQLRRSIPGSCNGSSSLQQQQEISLSQERTLPSSPSSLYSPHSKASNFMKGGLAQPSGRKQLM SGHTAVDSTKGILQWVQSITFVAISIDHSLHLVCQAESSSPGEIAFLLLCLTDSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10035973 [exp]	0	1
AT5G49430			WD40/YVTN repeat-like-containi...		Lus10016882 [exp]	1.4	0.9784
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10040892 [exp]	2.0	0.9788
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10032834 [exp]	2.2	0.9747
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10035106 [exp]	4.2	0.9764
AT5G09470		DIC3	dicarboxylate carrier 3 (.1)		Lus10024540 [exp]	5.3	0.9749
AT3G01460		MBD9, ATMBD9	methyl-CPG-binding domain 9 (....		Lus10008796 [exp]	5.5	0.9715
AT5G42220			Ubiquitin-like superfamily pro...		Lus10034563 [exp]	6.0	0.9594
AT1G16800			P-loop containing nucleoside t...		Lus10037304 [exp]	6.6	0.9702
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10025352 [exp]	7.3	0.9723
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10002605 [exp]	7.5	0.9724

Compare expression of checked genes

Lus10035973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.