Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17270 397 / 8e-137 PHT3;3 phosphate transporter 3;3 (.1) AT5G14040 301 / 2e-98 PHT3;1 phosphate transporter 3;1 (.1) AT3G48850 296 / 3e-96 PHT3;2 phosphate transporter 3;2 (.1) AT2G44300 140 / 6e-39 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G44290 136 / 3e-37 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT1G55260 112 / 2e-28 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) AT3G58550 100 / 2e-24 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) AT2G30160 81 / 2e-16 Mitochondrial substrate carrier family protein (.1) AT1G07030 79 / 5e-16 Mitochondrial substrate carrier family protein (.1) AT4G03115 78 / 1e-15 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026554 [exp] 399 / 1e-136 AT2G17270 472 / 8e-169 phosphate transporter 3;3 (.1) Lus10013839 [exp] 389 / 7e-133 AT2G17270 469 / 2e-167 phosphate transporter 3;3 (.1) Lus10041519 [exp] 298 / 1e-96 AT5G14040 586 / 0.0 phosphate transporter 3;1 (.1) Lus10012574 [exp] 294 / 2e-95 AT5G14040 580 / 0.0 phosphate transporter 3;1 (.1) Lus10016720 [exp] 283 / 2e-91 AT5G14040 568 / 0.0 phosphate transporter 3;1 (.1) Lus10036014 [exp] 279 / 1e-89 AT5G14040 572 / 0.0 phosphate transporter 3;1 (.1) Lus10042449 [exp] 110 / 8e-28 AT1G55260 160 / 3e-49 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2) Lus10016686 [exp] 76 / 5e-27 AT2G17270 57 / 1e-16 phosphate transporter 3;3 (.1) Lus10026220 [exp] 109 / 3e-26 AT2G44300 131 / 6e-37 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G098800 [exp] 448 / 2e-156 AT2G17270 447 / 2e-159 phosphate transporter 3;3 (.1) Potri.004G207200 [exp] 407 / 2e-140 AT2G17270 479 / 3e-172 phosphate transporter 3;3 (.1) Potri.017G060800 [exp] 291 / 4e-94 AT5G14040 542 / 0.0 phosphate transporter 3;1 (.1) Potri.015G104400 [exp] 284 / 9e-92 AT5G14040 489 / 2e-174 phosphate transporter 3;1 (.1) Potri.001G322300 [exp] 283 / 4e-91 AT5G14040 533 / 0.0 phosphate transporter 3;1 (.1) Potri.012G105100 [exp] 280 / 4e-90 AT5G14040 499 / 4e-178 phosphate transporter 3;1 (.1) Potri.001G232000 [exp] 144 / 2e-40 AT2G44300 179 / 4e-57 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.006G195700 [exp] 122 / 2e-32 AT2G44290 145 / 6e-44 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.001G008500 [exp] 111 / 3e-28 AT2G44290 155 / 6e-48 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1) Potri.003G217000 [exp] 111 / 3e-28 AT1G55260 149 / 5e-45 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein CL0482 [flax] [poplar] Prolamin PF00234 [flax] [poplar] Tryp_alpha_amyl Protease inhibitor/seed storage/LTP family
Representative CDS sequence Show only first row Show all	>Lus10035975 pacid=23141018 polypeptide=Lus10035975 locus=Lus10035975.g ID=Lus10035975.BGIv1.0 annot-version=v1.0 ATGACGGTGAGAGTGAAGGCAATGTCGTTGATGACGATGATACTGATGGTGGTGGTTTTACACTGCAAGACTGCAGCAGCTGCTGCTTCATCTTCAGAGA AGGAGATAGAGGAGTGTGCAGAGCAGCTGGCAGGGCTAGCAAGTTGCCTTCCTTACGTGGGAGGGACATCCAAATCTCCAACCAAAGATTGCTGCGGGGG ACTCAGGGAGTTGCTCAAAACCAACAAAAAATGTCTGTGCGTAGTAATCAAAGACAGGGACGACCCTCAGTTGGGTCTTCACATTGACCTCTCCCTCGCC ATCTCCCTCCCTTCCGTTTGCAACATCTCCCCTTCTCCCAACATCTCCAAATGCCCTGAGCTTCTCCACATGGCCCCCAACTCTCCAGAAGCACAAGTCT TCTATCAACTTGGGAACAACAACACCATCACTGGCCCTACTCCCGCCCCTGCCCTCCCCCCTGCTCCTTCAACCGGCGTTGGAGCTCCAAATGTGGCTGG AGCTATTAGTGGTGGTGGAGATAAGGGCAGACAGACTAGCGAAGCAAACAAGATGAACAGCAGTAATGGTGTCAGGTTGCTGGCGATTCTTTCGAATGGA ATAGTGAGTATCGTTGTTGTAGGAAAGGAAGAACATAAGTACAAAGCAGTCGCAAGAGTGGAAGGTATCGATTATTATGGCCTCTGCATTTTGGGTGGAA TTCTGAGTGCCGGCATTACCCATGTAGCCATCACTCCTCTTGATGTTGTCAAGGTCAACATGCAGCTCAGTCCAATCAAATACCCAAGCATCCATACTTG CTTTAGCAGCCTACTGAGGGAGGAAGGCCATTGCACATTTTGGAGGGGTTGGGGAAGCAAGTTCTTTGGCTATGGACTCCAAGGCGGGTGCAGATTTGGT CTATACGAATATTTCAAAACTGTATATTCCAATCTAATTCCAGCAGAGTATCAGCGGAATCGCAGTGTCGTATTTTTCACAAGTAGCGCTACAGCCGAAT TGTTTGCAAACCTTTGTCTCTGCCCTTTTGAGGCCATCAAGGTGAAGGTTCAAGGTCAGCCTAGCTTCGCCAAGGGACTGCATGACGGATTCCCAAAACT ATATGCATCCGACGGCCTATTGGGGTTCTACAGAGGTCTTGGTCCCCTTATGGCTCGAAACATCCCATTCTCGATGGTGATGTTCTCGACATTTGAGCAC AGTGTAGATATTTTGTACCGGAAAGTAATGAAAGCAAGGAAGGAGGAATGCTCGAAAGGTTGGCAGCTGGGGATAACATGTATGGCTGGATACGCAGCTG GGTCTGTCGGGAGTCTCGTGTCTAATCCAGCCGACAATCTTGTAACTCATCTTTATAACAACAACAAGGCTGATGGCCTCATCATGGCTGTGAAAAAGAT AGGTTATCTCAACTTGTTTACGAGAAGCCTTCCAATCAGGGTAATCCTCGTTGGACCAGCCGTCACTCTGCAGTGGTTGTTGTTCGACACTATTAAAGTC ATCTCTGGACTGCCAACCAGTGGAGAGGTCAAAACTGATGCTAGCTAG
AA sequence Show only first row Show all	>Lus10035975 pacid=23141018 polypeptide=Lus10035975 locus=Lus10035975.g ID=Lus10035975.BGIv1.0 annot-version=v1.0 MTVRVKAMSLMTMILMVVVLHCKTAAAAASSSEKEIEECAEQLAGLASCLPYVGGTSKSPTKDCCGGLRELLKTNKKCLCVVIKDRDDPQLGLHIDLSLA ISLPSVCNISPSPNISKCPELLHMAPNSPEAQVFYQLGNNNTITGPTPAPALPPAPSTGVGAPNVAGAISGGGDKGRQTSEANKMNSSNGVRLLAILSNG IVSIVVVGKEEHKYKAVARVEGIDYYGLCILGGILSAGITHVAITPLDVVKVNMQLSPIKYPSIHTCFSSLLREEGHCTFWRGWGSKFFGYGLQGGCRFG LYEYFKTVYSNLIPAEYQRNRSVVFFTSSATAELFANLCLCPFEAIKVKVQGQPSFAKGLHDGFPKLYASDGLLGFYRGLGPLMARNIPFSMVMFSTFEH SVDILYRKVMKARKEECSKGWQLGITCMAGYAAGSVGSLVSNPADNLVTHLYNNNKADGLIMAVKKIGYLNLFTRSLPIRVILVGPAVTLQWLLFDTIKV ISGLPTSGEVKTDAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17270		PHT3;3	phosphate transporter 3;3 (.1)		Lus10035975 [exp]	0	1
					Lus10041251 [exp]	1.0	0.9825
AT5G17390			Adenine nucleotide alpha hydro...		Lus10034661 [exp]	1.4	0.9781
AT2G37870			Bifunctional inhibitor/lipid-t...		Lus10031925 [exp]	2.4	0.9777
AT3G54450			Major facilitator superfamily ...		Lus10039521 [exp]	4.0	0.9710
AT4G23610			Late embryogenesis abundant (L...		Lus10027179 [exp]	4.5	0.9696
AT4G24910			Protein of unknown function (D...		Lus10002345 [exp]	4.9	0.9696
AT1G24620			EF hand calcium-binding protei...		Lus10028913 [exp]	5.7	0.9628
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Lus10023873 [exp]	7.3	0.9602
AT4G23610			Late embryogenesis abundant (L...		Lus10039662 [exp]	7.4	0.9570
AT4G24910			Protein of unknown function (D...		Lus10003160 [exp]	8.4	0.9692

Compare expression of checked genes

Lus10035975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.