Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35470 605 / 0 PIRL4, DREB1C plant intracellular ras group-related LRR 4 (.1) AT2G17440 561 / 0 PIRL5 plant intracellular ras group-related LRR 5 (.1) AT3G26500 171 / 3e-47 PIRL2 plant intracellular ras group-related LRR 2 (.1) AT3G11330 171 / 9e-47 PIRL9 plant intracellular ras group-related LRR 9 (.1) AT5G05850 166 / 3e-45 PIRL1 plant intracellular ras group-related LRR 1 (.1) AT1G12970 160 / 3e-43 PIRL3 plant intracellular ras group-related LRR 3 (.1) AT4G26050 158 / 4e-43 PIRL8 plant intracellular ras group-related LRR 8 (.1) AT2G19330 137 / 1e-35 PIRL6 plant intracellular ras group-related LRR 6 (.1) AT4G29880 132 / 6e-34 PIRL7 plant intracellular ras group-related LRR 7 (.1) AT3G15410 110 / 2e-25 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016684 [exp] 852 / 0 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2) Lus10000900 [exp] 375 / 1e-124 AT4G35470 409 / 2e-138 plant intracellular ras group-related LRR 4 (.1) Lus10004559 [exp] 246 / 4e-78 AT4G35470 274 / 1e-89 plant intracellular ras group-related LRR 4 (.1) Lus10013689 [exp] 169 / 1e-46 AT3G11330 473 / 3e-165 plant intracellular ras group-related LRR 9 (.1) Lus10017948 [exp] 170 / 3e-46 AT3G11330 557 / 0.0 plant intracellular ras group-related LRR 9 (.1) Lus10003229 [exp] 136 / 3e-35 AT2G19330 408 / 4e-142 plant intracellular ras group-related LRR 6 (.1) Lus10021635 [exp] 102 / 4e-24 AT5G07910 360 / 6e-127 Leucine-rich repeat (LRR) family protein (.1) Lus10004558 [exp] 99 / 1e-23 AT4G35470 92 / 3e-21 plant intracellular ras group-related LRR 4 (.1) Lus10000681 [exp] 99 / 4e-23 AT5G07910 357 / 2e-125 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G065000 [exp] 716 / 0 AT4G35470 693 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.005G098600 [exp] 701 / 0 AT4G35470 672 / 0.0 plant intracellular ras group-related LRR 4 (.1) Potri.003G090100 [exp] 461 / 5e-158 AT2G17440 416 / 2e-140 plant intracellular ras group-related LRR 5 (.1) Potri.001G144100 [exp] 450 / 1e-153 AT4G35470 448 / 6e-153 plant intracellular ras group-related LRR 4 (.1) Potri.015G083800 [exp] 169 / 3e-46 AT3G11330 471 / 9e-163 plant intracellular ras group-related LRR 9 (.1) Potri.010G046500 [exp] 168 / 4e-46 AT1G12970 493 / 7e-173 plant intracellular ras group-related LRR 3 (.1) Potri.012G085600 [exp] 163 / 6e-44 AT3G11330 427 / 8e-146 plant intracellular ras group-related LRR 9 (.1) Potri.018G139700 [exp] 143 / 8e-38 AT2G19330 406 / 2e-141 plant intracellular ras group-related LRR 6 (.1) Potri.006G072700 [exp] 140 / 8e-37 AT2G19330 416 / 4e-145 plant intracellular ras group-related LRR 6 (.1) Potri.004G088500 [exp] 109 / 9e-25 AT1G69550 647 / 0.0 disease resistance protein (TIR-NBS-LRR class) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10035976 pacid=23141241 polypeptide=Lus10035976 locus=Lus10035976.g ID=Lus10035976.BGIv1.0 annot-version=v1.0 ATGAAAATTCACAGATCTTTACCTGCAAGGCCCTCAATCGACGAGGTTGAAGCCGCCAATGAATTGATTCAGAGCGTTGACAAAGAAGAAGAGGCTAGGC TTGATGCCATCTACCGACAGCGGAAGAGCCCTGATGTACCTGAAGAACTCTTCTCCATTCTCGTTGAGATGCACAAGAACTCCGTCTCTTTCCATAGTAA AGACCAGAAGCGCGACGCCCTCAGATTGCTCGACCTAGAAAACCTCCACTCTCATTTCGACCATCTTATCCAGAGAGCGTCTATGTGTTTACCTTCTTCC TCATCCTCTTCATCTACCCCTAACTATGCTGCTGCTTCCGTTTCTGCCGGAACTTCTAAGCCTGCAGTCGGATCTTCGTCTTCCTCCGCCGCAAAGTCCA GCTTTTACTTGTCGGAAAAGCAGCCTGTCGGAGCTGCGGATTTGGTTACCAGAGATGACAGCTACATGAAGAAGGCGAAGCCGTTATTTTACTCCGGAGG AGCAGCTACTGCCGCTGGAATTGGTGTTCGAGAACCAACCATACTGGATTCGACTCTGAGATCCACGATTAACGCTTCAGGTCAAGATGGCGGTGATAAA TTGAGCCTCATTAAGCTAGCTAGCCTGATCGAAGTCTCTGCTAAGAAAGGCGCTACGGAGCTCAACCTCGCGAGTAAGCTGATGGATCAGATTGAGTGGC TACCTGATTCAATAGGCAAGTTATCAAGTTTGGTAACCTTAGATTTGTCTGACAATAGGATTATGGTCTTGCCACCCTCCATTGGCGGCCTCTCTTCCTT GACAAGATTGGATTTGCATTCAAACAGAATTGCTCAGCTACCTGAATCCATTGGCGATCTACTTAGCTTGGTCTTTCTGGATCTCCGTGCTAACCAGTTA TCCACACTTCCTGCTACAATTGGAAGATTGGTTCGCCTCGAGGATCTTGATCTGAGCTCAAACCAGCTCAACTCCCTTCCGGATTCAATAGGATCACTAG CTAGCCTGAAAAACCTGAGCATTGAGACGAACGAGGTTGAAGAGATTCCACATACTGTGGGTCATTGTACTTCGCTGAAGGAGCTCCAAGCGGATTACAA CAAGTTGAAAGCCCTTCCTGAAGCTGTGGGCAAGATAGAGACGTTAGAGGTTCTCTCTGTGCGCTACAACAACATCAGACAGCTGCCAACAACCATGTCA TCTCTAGTGAATCTGCGGGAGCTTGACGTGAGTTTCAATGAGCTGGAGGCAGTGCCTGAGAGCTTGTGTTTCGCCACTTCTCTTGTGAAGATCAATGTTG GAAACAACTTTGCTGACCTTAGGTTCCTCCCGAGGTCCATTGGGAATCTTAGCAACCTTGAGGAACTAGATATAAGCAACAATCAGATTCGCGTGCTTCC AGACTCCTTCAAGCTGCTTTCCCGATTGCGGGTCCTGCGAGTGGAAGAGAATCCTCTTGAGATGCCGCCAAGGCATGTGGCTGACAAAGGCGCACAGGCT GTTGTTCAGTTCATGGTGGAAATGTGCGAGAAAAGAGACATCAAGGTACAGCCCGTGAAACAGAAAAAGAGTTGGGCTCAGATATGCTGCTTTTCGGAGT CCAACAAAAGGAAGCGCGATGGGATGGACTACGTAAAAGCGTGA
AA sequence Show only first row Show all	>Lus10035976 pacid=23141241 polypeptide=Lus10035976 locus=Lus10035976.g ID=Lus10035976.BGIv1.0 annot-version=v1.0 MKIHRSLPARPSIDEVEAANELIQSVDKEEEARLDAIYRQRKSPDVPEELFSILVEMHKNSVSFHSKDQKRDALRLLDLENLHSHFDHLIQRASMCLPSS SSSSSTPNYAAASVSAGTSKPAVGSSSSSAAKSSFYLSEKQPVGAADLVTRDDSYMKKAKPLFYSGGAATAAGIGVREPTILDSTLRSTINASGQDGGDK LSLIKLASLIEVSAKKGATELNLASKLMDQIEWLPDSIGKLSSLVTLDLSDNRIMVLPPSIGGLSSLTRLDLHSNRIAQLPESIGDLLSLVFLDLRANQL STLPATIGRLVRLEDLDLSSNQLNSLPDSIGSLASLKNLSIETNEVEEIPHTVGHCTSLKELQADYNKLKALPEAVGKIETLEVLSVRYNNIRQLPTTMS SLVNLRELDVSFNELEAVPESLCFATSLVKINVGNNFADLRFLPRSIGNLSNLEELDISNNQIRVLPDSFKLLSRLRVLRVEENPLEMPPRHVADKGAQA VVQFMVEMCEKRDIKVQPVKQKKSWAQICCFSESNKRKRDGMDYVKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10035976 [exp]	0	1
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Lus10011290 [exp]	1.7	0.9375
AT1G26945	bHLH	KDR, PRE6	KIDARI, basic helix-loop-helix...		Lus10037198 [exp]	1.7	0.9463
AT5G27780			SAUR-like auxin-responsive pro...		Lus10023969 [exp]	3.5	0.9377
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10012151 [exp]	3.5	0.9203
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Lus10036144 [exp]	4.0	0.9350
AT4G38840			SAUR-like auxin-responsive pro...		Lus10029198 [exp]	5.7	0.8991
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Lus10028634 [exp]	7.5	0.9070
AT5G44680			DNA glycosylase superfamily pr...		Lus10036248 [exp]	7.7	0.9058
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10006610 [exp]	8.1	0.9027
AT2G41640			Glycosyltransferase family 61 ...		Lus10042044 [exp]	8.7	0.8880

Compare expression of checked genes

Lus10035976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.