Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65960 339 / 2e-113 GTP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016687 [exp] 716 / 0 AT5G65960 378 / 1e-128 GTP binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G177100 [exp] 370 / 1e-125 AT5G65960 394 / 1e-135 GTP binding (.1) Potri.007G064500 [exp] 247 / 1e-78 AT5G65960 271 / 2e-88 GTP binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10199 [flax] [poplar] Adaptin_binding Alpha and gamma adaptin binding protein p34 CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10035977 pacid=23141207 polypeptide=Lus10035977 locus=Lus10035977.g ID=Lus10035977.BGIv1.0 annot-version=v1.0 ATGGAAGTAGGTGAAGAACTGAGTAGTAGATGTTCAGCACCGGTGGACAACAGGCCTGGAATCCTCATCGTTGGTTCTTCCAGCGTTGGCAAACGCACCC TCCTCTCCAGTTTGCTTTCACTGGATCTAGAAGATGATCCCGATTCCGATTCTCAGTTGCTCGTCCGTGGGTGGACGATCGACACAAAGTACTACGCCGC TGATGTATCTGTCTGGGTTGCTCATCTCACCGATGGATTCAGTATCGAGAGTTTCCCAGAGCGTCGACGATTGGCCGCCCTGGTCATGGTCTTCGATGTC ACCGATCCCTCGTCGCTGGGTGCGGTTCAGGATTGGGTATCCCGCACTCATATCCACGAGTTCGAGATACTGTTGTGCGTAGGGAACAAAGTGGATCTTG TATCGGGTCACCCTGTCCACCAAGAGTACAGAAGGCGGTTAATGATGCAACAGCAGAAGCTTGAGCTTGAGCAATCTTCCACTTCTGAGTTCGGAATCTC TGAAACAGAAGGTACTAATTTACTAGTGCGCGAGGAGGAGGAGGAAGAAGAGGAGGAGGAGGAGCAATCCTCGCAGATCAGGAGGTCCTGTCTTCAATGG TGCACTGAGCGGAATATCGAGTACATTGAAGCTTGTGTTTCCAATCCCGACTTTGATAAATGTCTGTCTGTTGATGGTGACTCTCAAGGGGTTGATCGAC TTGTTGGTGCACTTTCTGCTCATATGTGGCCTGGTATGATCTTGAAATCAGGAAATAAGATGGCAGAACAACCGTTACCAGATGAAGAAGACTTGTCTGA AGACTCCGACTATGAATTAGAGTATGAGGTGCTGTCCGAAGGTTCTGCAGAACCGTGGAATGACAATAGTCCTAGATGGGTTTCTGCCGATTGTATTACT TCTACTTCTAGTGCAGGGGAAAATTTTGAAAACAGTTATGTCAGTGGACTAGCACATGGAGAGAAAGAAGGTTCTGGTATGGTATCAGATGCAGGGGAAG GTGTTGCAACAAAGCATGCTGTTATTGGAAGTGATGAAAAGAAGGGGGAAAAGTGTCATCTAGGAAATTTACAGCCGCCAATATCAACAGGAGAATCACC AGAAGATGATAAAGGAGCAGTGGCCAATGAAGTGGTAGCTGGAGATGACGAGGAGTGTAATGAAATTGCACCATTTGACTTTGAGGACTTGGAACAGCTG ATGTCTGAGATTGGAAACATAAGGGACAACTTGAGATTGATGCCAGATTTTCAAAGGAGGGAAATGGCTGCAACTCTTGCTATGAAAATGGCTTCCATGT TTGGTGGTGGAAGTGATGAGGAAGAGGAGCTATAG
AA sequence Show only first row Show all	>Lus10035977 pacid=23141207 polypeptide=Lus10035977 locus=Lus10035977.g ID=Lus10035977.BGIv1.0 annot-version=v1.0 MEVGEELSSRCSAPVDNRPGILIVGSSSVGKRTLLSSLLSLDLEDDPDSDSQLLVRGWTIDTKYYAADVSVWVAHLTDGFSIESFPERRRLAALVMVFDV TDPSSLGAVQDWVSRTHIHEFEILLCVGNKVDLVSGHPVHQEYRRRLMMQQQKLELEQSSTSEFGISETEGTNLLVREEEEEEEEEEEQSSQIRRSCLQW CTERNIEYIEACVSNPDFDKCLSVDGDSQGVDRLVGALSAHMWPGMILKSGNKMAEQPLPDEEDLSEDSDYELEYEVLSEGSAEPWNDNSPRWVSADCIT STSSAGENFENSYVSGLAHGEKEGSGMVSDAGEGVATKHAVIGSDEKKGEKCHLGNLQPPISTGESPEDDKGAVANEVVAGDDEECNEIAPFDFEDLEQL MSEIGNIRDNLRLMPDFQRREMAATLAMKMASMFGGGSDEEEEL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65960			GTP binding (.1)		Lus10035977 [exp]	0	1
AT4G24760			alpha/beta-Hydrolases superfam...		Lus10042075 [exp]	4.2	0.7709
AT5G20570		HRT1, ROC1, RBX...	REGULATOR OF CULLINS-1, RING-b...		Lus10013153 [exp]	13.2	0.7434
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Lus10037025 [exp]	13.4	0.7636
AT2G37550		ASP1, AGD7	yeast pde1 suppressor 1, ARF-G...		Lus10023766 [exp]	18.4	0.7515
AT1G24350			Acid phosphatase/vanadium-depe...		Lus10036984 [exp]	38.5	0.7235
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Lus10014129 [exp]	42.8	0.7217
AT4G26620			Sucrase/ferredoxin-like family...		Lus10022532 [exp]	43.2	0.6474
AT1G78310			VQ motif-containing protein (....		Lus10036479 [exp]	44.4	0.7218
AT2G36060		MMZ3 ,UEV1C	UBIQUITIN E2 VARIANT 1C, MMS Z...		Lus10004211 [exp]	44.9	0.7026
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10033861 [exp]	50.4	0.6288

Compare expression of checked genes

Lus10035977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.