Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65980 487 / 1e-172 Auxin efflux carrier family protein (.1) AT2G17500 464 / 1e-163 Auxin efflux carrier family protein (.1.2.3.4) AT1G76520 348 / 8e-118 Auxin efflux carrier family protein (.1.2) AT1G20925 344 / 3e-115 Auxin efflux carrier family protein (.1) AT1G76530 288 / 3e-94 Auxin efflux carrier family protein (.1) AT5G01990 218 / 1e-66 Auxin efflux carrier family protein (.1) AT1G71090 207 / 3e-62 Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016688 [exp] 753 / 0 AT2G17525 655 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012708 [exp] 579 / 0 AT5G65980 494 / 2e-175 Auxin efflux carrier family protein (.1) Lus10001303 [exp] 573 / 0 AT5G65980 491 / 6e-174 Auxin efflux carrier family protein (.1) Lus10025166 [exp] 350 / 1e-118 AT1G76520 455 / 8e-160 Auxin efflux carrier family protein (.1.2) Lus10004287 [exp] 324 / 4e-108 AT1G20925 430 / 1e-148 Auxin efflux carrier family protein (.1) Lus10016046 [exp] 298 / 1e-97 AT1G20925 392 / 2e-133 Auxin efflux carrier family protein (.1) Lus10030715 [exp] 234 / 1e-73 AT1G20925 295 / 6e-96 Auxin efflux carrier family protein (.1) Lus10035610 [exp] 195 / 4e-58 AT5G01990 605 / 0.0 Auxin efflux carrier family protein (.1) Lus10003240 [exp] 191 / 3e-54 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G099300 [exp] 530 / 0 AT2G17500 475 / 2e-167 Auxin efflux carrier family protein (.1.2.3.4) Potri.002G003500 [exp] 352 / 2e-119 AT1G20925 499 / 4e-176 Auxin efflux carrier family protein (.1) Potri.001G456300 [exp] 340 / 1e-114 AT1G76520 382 / 5e-131 Auxin efflux carrier family protein (.1.2) Potri.001G456400 [exp] 340 / 2e-114 AT1G76520 419 / 1e-145 Auxin efflux carrier family protein (.1.2) Potri.011G145600 [exp] 327 / 3e-109 AT1G76520 368 / 2e-125 Auxin efflux carrier family protein (.1.2) Potri.003G108100 [exp] 310 / 1e-102 AT1G76520 398 / 4e-137 Auxin efflux carrier family protein (.1.2) Potri.011G145700 [exp] 303 / 4e-100 AT1G76520 396 / 2e-136 Auxin efflux carrier family protein (.1.2) Potri.016G141700 [exp] 217 / 2e-66 AT5G01990 622 / 0.0 Auxin efflux carrier family protein (.1) Potri.006G112200 [exp] 206 / 1e-62 AT5G01990 602 / 0.0 Auxin efflux carrier family protein (.1) Potri.001G125501 [exp] 206 / 8e-62 AT1G76520 266 / 6e-85 Auxin efflux carrier family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10035978 pacid=23141043 polypeptide=Lus10035978 locus=Lus10035978.g ID=Lus10035978.BGIv1.0 annot-version=v1.0 ATGGGTTTGTGGACACTACTGGAGGTGGCTTGTATGCCAGTGATACAAGTCCTCATCATCGGCTTCTTGGGGGCATTCTTGGCAACTGACTACTGCAACA TTCTCCATGCTGATGCTAGAAAATACATGAACAAGATTGTTTATGCGGTTTTCACACCGGCTCTCATGTTTTCCATTCTGTCCACAACTGTCACTCTGGA GGACATTATCTCATGGTGGTTTATGCCGATTAACATCGGTCTCACAGTGTTATTTGGTGCAATTTTAGGATGGGTATTGGTCAAGTTATTGCGACCCAAG CCTCATCTCCAAGGTCTTATCATTGCTACCTGTGCCACTGGAAACTATGGGAATCTGCTGCTGATAGTTGTGCCAGCAATGTGCAAAGAAGAAGGAACCC CATTTGGCGATCATTCAAAATGCGCCTCCATTGGACTCTCATATGCTTCCTTCTCTTGTGCACTTGGTGGTATCTTTTTCTGGACCTTTGGTTACCAACT CATCCGCAACTCTGCTACTCAATTTAAAGCCTCCAACAAAGACCTACAATCTACTCATCTTCTTAACAAACAAAAAGAAGATGCAGAAGCAGAAAGCAGT TATCTTCAAGATTCAGAAATTCCATCTATTGATGGAGAAGGCAAGCTGTCTAAACTAGTAGTTGTTCTGCATCAGATATTCCGCGAGCTCACTGCTCCGC CTACCCTTTCCGCGATGCTGGGTTTCTTGTTTGGAGCTACAGCATTTCTGAGGAACCTGGTAGTGGGTGTCGATGCCCCGTTGCGTGTTATCCAGGACTC CATCTCATTACTTGGTGATGGGGCAATTCCGTCCATAACTCTTATACTGGGAGGGAACCTCACTCGAGGGTTGCGGTCTGCAAATATGAAACCATGGATG ATCGTGGGGGTGGTGTGCGTAAGATACGTAATAATGCCGGTGATTGGGATATGCATGATAAAGGCAGCTACCAGTGCTGGGCTTCTACCGTCGGATCCTC TGTTCGCATATGTACTGATGCTGCAATACACTATCCCACCTGCAATGAATATTGGTACTATCACCCAGCTGTTTGATGTGGCTCAAGAGGAGTGCTCTGT TCTCTTCCTTTGGACTTACTTGCTAGCAGCCGTAGCATTCACCTTCTGGTCTACTGTCTACTTGTCCATGTTATCCTGA
AA sequence Show only first row Show all	>Lus10035978 pacid=23141043 polypeptide=Lus10035978 locus=Lus10035978.g ID=Lus10035978.BGIv1.0 annot-version=v1.0 MGLWTLLEVACMPVIQVLIIGFLGAFLATDYCNILHADARKYMNKIVYAVFTPALMFSILSTTVTLEDIISWWFMPINIGLTVLFGAILGWVLVKLLRPK PHLQGLIIATCATGNYGNLLLIVVPAMCKEEGTPFGDHSKCASIGLSYASFSCALGGIFFWTFGYQLIRNSATQFKASNKDLQSTHLLNKQKEDAEAESS YLQDSEIPSIDGEGKLSKLVVVLHQIFRELTAPPTLSAMLGFLFGATAFLRNLVVGVDAPLRVIQDSISLLGDGAIPSITLILGGNLTRGLRSANMKPWM IVGVVCVRYVIMPVIGICMIKAATSAGLLPSDPLFAYVLMLQYTIPPAMNIGTITQLFDVAQEECSVLFLWTYLLAAVAFTFWSTVYLSMLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65980			Auxin efflux carrier family pr...		Lus10035978 [exp]	0	1
AT3G28420			Putative membrane lipoprotein ...		Lus10005837 [exp]	2.8	0.8742
AT2G17525			Pentatricopeptide repeat (PPR)...		Lus10016688 [exp]	3.2	0.8262
AT1G69420			DHHC-type zinc finger family p...		Lus10026632 [exp]	4.2	0.8239
AT1G12330			unknown protein		Lus10004335 [exp]	5.3	0.7861
AT3G28420			Putative membrane lipoprotein ...		Lus10039459 [exp]	10.5	0.7978
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10014636 [exp]	13.9	0.8134
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10032597 [exp]	16.7	0.7274
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10002101 [exp]	21.5	0.7508
AT1G69420			DHHC-type zinc finger family p...		Lus10030426 [exp]	27.5	0.7252
AT2G33360			Protein of unknown function (D...		Lus10023729 [exp]	30.8	0.6844

Compare expression of checked genes

Lus10035978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.