Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17520 640 / 0 ATIRE1-2, IRE1A ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-2, Endoribonuclease/protein kinase IRE1-like (.1) AT5G24360 531 / 4e-176 AtIRE1b, ATIRE1-1 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) AT3G11870 340 / 7e-107 Endoribonuclease/protein kinase IRE1-like (.1) AT1G09000 86 / 4e-17 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT5G66850 86 / 4e-17 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT3G06030 86 / 5e-17 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT1G53570 86 / 6e-17 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G54960 85 / 8e-17 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G07650 83 / 4e-16 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G53930 82 / 7e-16 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030730 [exp] 689 / 0 AT5G24360 706 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Lus10013212 [exp] 685 / 0 AT5G24360 701 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Lus10002096 [exp] 89 / 8e-18 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10010519 [exp] 87 / 3e-17 AT3G06030 726 / 0.0 NPK1-related protein kinase 3 (.1) Lus10034060 [exp] 87 / 3e-17 AT3G06030 730 / 0.0 NPK1-related protein kinase 3 (.1) Lus10019635 [exp] 86 / 8e-17 AT5G66850 561 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10042750 [exp] 80 / 5e-16 AT4G08500 380 / 8e-129 MAPK/ERK kinase kinase 1 (.1) Lus10009339 [exp] 83 / 6e-16 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10021766 [exp] 83 / 7e-16 AT5G66850 452 / 7e-148 mitogen-activated protein kinase kinase kinase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G059000 [exp] 855 / 0 AT2G17520 673 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-2, Endoribonuclease/protein kinase IRE1-like (.1) Potri.005G254000 [exp] 686 / 0 AT5G24360 722 / 0.0 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Potri.002G007201 [exp] 200 / 1e-59 AT5G24360 199 / 6e-60 ARABIDOPSIS THALIANA INOSITOL REQUIRING 1-1, inositol requiring 1-1 (.1.2.3) Potri.010G092000 [exp] 87 / 2e-17 AT3G06030 698 / 0.0 NPK1-related protein kinase 3 (.1) Potri.007G039800 [exp] 87 / 3e-17 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G033400 [exp] 87 / 3e-17 AT1G09000 680 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.007G128300 [exp] 87 / 4e-17 AT3G59410 1610 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 2, protein kinase family protein (.1.2) Potri.008G149500 [exp] 86 / 4e-17 AT3G06030 681 / 0.0 NPK1-related protein kinase 3 (.1) Potri.013G022700 [exp] 84 / 2e-16 AT1G09000 713 / 0.0 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) Potri.005G135100 [exp] 83 / 4e-16 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06479 [flax] [poplar] Ribonuc_2-5A Ribonuclease 2-5A CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10035979 pacid=23141051 polypeptide=Lus10035979 locus=Lus10035979.g ID=Lus10035979.BGIv1.0 annot-version=v1.0 ATGAAACTCCTTGTTCCCTTTTCCTTTGCCCTCTGCATCCTATCGCTTTCAACACCCGTATATCTCGCCGTCGATGAAGCAGCGGTGGTTATTCCGCCGC CCCCTCGACAAAATTGGGTTGACTCAAAGCAAGTGACTTTTTCACCTGGTTCCCGCTCTCTCAAATCATTCTCCTCCTCGCAATCGGAAGAGTCTGCTGC TGAGTTGGTTGCCCTCATCAATGGAACTATTTGTCTTGAAGATTCCGTCTCCGGAGGAATCGTGTGGTCTTTCTCATCTGGGTCGCCTATCTACTCTTCC TATCAATCTCCCCTCCTGGATCAAGACTCCGGCGCCGGCGGCGATGACCTATTTGGACCGAGTTCTTCCTTCTTCCTCGATTATGGAGATGATTGGCAGC TCTATGTCCATGCCAAACATTCTTCCCGTGTGAAACTTCGCAAGTCTATCGACGACTTTATCAACATTACACCTCACATTTGTGAGGATGGAGCTGTTAT CCTTGGCTCCAAGAAAACTACTGCGTTTGCTCTTGAGGCTAAGACCGGCAGACTTGTCCGTACTTTCACCTCCCCTGATTCTTTGCCGCCATATCAGCAA GTAAATTATAATGTCCCGCCGCAACATGATGATCATAACAAGGGTGATATGCTTTATATCACCAGGACAGATTATGTCCTGGAAACTTTTGGTCCCAATT CCGATAAAGTTTCTTGGAGTTTGGAAACGGCAACGATTGACGCTGCTTTTCTTTGTAAAGATGCTACGGCAATGGATGTTGATTTGCCGTGTCAATCCAG AAGGTTGGTAGTTCGAAAGCCGGATAAGCCTCAATCTTCCTTGCCGCCTGTTGATGGTGATGCTAGACTGCTCCTTCCTTCTGCTACAGTGTTCCGTCCT AGTTCTAAACCTACCATTGCTTCTCCAGCAGATGACGGAGAAGGAATGCTTGGTGTATCAAATGATCACGGGCGAATGTTTCACAGCCTTGCGTTCAGCA AGTTATCTAAGTGGTTAAAAGCTTTATTCCTCGTCTCGTTTGTCGTCACCATTGCATTAGCGTTTGTATATTGCTACCGTACTCTGCTGGGAACGGAAAA TGTCACTTTGAGAAAGAAGAGGAAGAGCCGTAGATTAGGCAAAAACATTAAGAATGCTGTTGAAACAAGAAGTAAATCTGATGGTCACCTAAATGCTGAT GAGGATGGTAACAACATCTGGTTGAACCTTGATCGACTTGCTGTTCATGATGTGAATGGGCGTAGAATTGGTAAGTTGTATGTATCAGACACGGAGATTG CTAAGGGGAGTAATGGCACTGTTGTGCTTGAGGGCATTTACGAAGGTCGCCTAGTTGCTGTCAAGCGACTTGTCAAGGCTCATAATGATGTGGCTTTTAA AGAAATTCAGAATCTCATCGCATCCGACAGGCATCCAAATATTGTCCGATGGTATGGGGTGGAGAATGATAAGGATTTCATTTACCTTTCTCTAGAACGT TGTACTTGCAGTTTGAATGATTTGATTCAGATACACTGCTGGTCCTCGTGTTTATCTATCAAACAACAAGCCACAAGAACTGCAATGCATAACCCACAAC TGGAATCAGCTCACACAATTATGCGAGATCTGAATTTGTGGAAAGCAAATGGCCGGCCATCGACACTTTTACTGACACTTATGAGGGATATGGTATCTGG ACTTGCACACTTGCATGAACTGGGAATAATTCACAGGGACCTGAAGCCTCAAAATGTGTTGATTAGTAAGGAAAAATCTTTATCTGCCAAGCTATCCGAC ATGGGCATGAGTAAGCGACTAGTTGGGGATATGTCTTCATTGGGCCATCTAGCAACTGGATGTGGCAGCTCTGGTTGGCAAGCGCCTGAACAACTTCTTC AAGGGCGGCAAACACGTTCATTGGATTTGTTTGGATTAGGTTGTATCTTCTTTTTCTGCATCACTGGCGGTAAACATCCATATGGCGAACCACTCGAACG TGATATCAACATAGTGAAGAACAGACTCGACCTCTCCTTGTTGGAACATTTTCCAGAAGCTGAGAATCTTATTTCTATTTTAGTCAATCATGATCCTGAA CAAAGACCAACCGCGCAAGAAGTTTTGCAACATCCTATGTTTTGGAGTTCCGAGATGAGACTGTCGTTTCTACGCGACACAAGTGACAGGATAGAATTGG AAGATCGGGAGAGCAACTCTGATTTCATAAAAGCACTGGAGGGAATTGGACCAATGGTGGTTGGTGGAGGGAAATGGGATGTGAAGATGGAACGTACATT CATCAATAACGTTGGTCATTACCGTCGTTACAAATATGACAGTGTGAGGGACTTGTTGCGCCTCATGCGCAACAAGCTGAGTCATTACAGAGAACTTCCC AAACAAATTCAGGAGCTCATTGGAGCAATTCCTGAGGGGTATGATGACTATTTCACCAGTAGATTCCCCAAGTTGTTGATTGAAGTATACAAAGTTGGCC GGAGATACTGTGGAGAAGAGGAATGCTTTCGGAAATACTTCAACATGGTTGGATGA
AA sequence Show only first row Show all	>Lus10035979 pacid=23141051 polypeptide=Lus10035979 locus=Lus10035979.g ID=Lus10035979.BGIv1.0 annot-version=v1.0 MKLLVPFSFALCILSLSTPVYLAVDEAAVVIPPPPRQNWVDSKQVTFSPGSRSLKSFSSSQSEESAAELVALINGTICLEDSVSGGIVWSFSSGSPIYSS YQSPLLDQDSGAGGDDLFGPSSSFFLDYGDDWQLYVHAKHSSRVKLRKSIDDFINITPHICEDGAVILGSKKTTAFALEAKTGRLVRTFTSPDSLPPYQQ VNYNVPPQHDDHNKGDMLYITRTDYVLETFGPNSDKVSWSLETATIDAAFLCKDATAMDVDLPCQSRRLVVRKPDKPQSSLPPVDGDARLLLPSATVFRP SSKPTIASPADDGEGMLGVSNDHGRMFHSLAFSKLSKWLKALFLVSFVVTIALAFVYCYRTLLGTENVTLRKKRKSRRLGKNIKNAVETRSKSDGHLNAD EDGNNIWLNLDRLAVHDVNGRRIGKLYVSDTEIAKGSNGTVVLEGIYEGRLVAVKRLVKAHNDVAFKEIQNLIASDRHPNIVRWYGVENDKDFIYLSLER CTCSLNDLIQIHCWSSCLSIKQQATRTAMHNPQLESAHTIMRDLNLWKANGRPSTLLLTLMRDMVSGLAHLHELGIIHRDLKPQNVLISKEKSLSAKLSD MGMSKRLVGDMSSLGHLATGCGSSGWQAPEQLLQGRQTRSLDLFGLGCIFFFCITGGKHPYGEPLERDINIVKNRLDLSLLEHFPEAENLISILVNHDPE QRPTAQEVLQHPMFWSSEMRLSFLRDTSDRIELEDRESNSDFIKALEGIGPMVVGGGKWDVKMERTFINNVGHYRRYKYDSVRDLLRLMRNKLSHYRELP KQIQELIGAIPEGYDDYFTSRFPKLLIEVYKVGRRYCGEEECFRKYFNMVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17520		ATIRE1-2, IRE1A	ARABIDOPSIS THALIANA INOSITOL ...		Lus10035979 [exp]	0	1
AT1G05840			Eukaryotic aspartyl protease f...		Lus10021485 [exp]	3.3	0.9413
AT2G27480			Calcium-binding EF-hand family...		Lus10043389 [exp]	12.2	0.9324
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10036618 [exp]	16.9	0.9208
AT5G24890			unknown protein		Lus10009793 [exp]	17.6	0.9302
AT4G30790			unknown protein		Lus10005509 [exp]	18.5	0.9224
AT1G58030		CAT2	cationic amino acid transporte...		Lus10001334 [exp]	19.4	0.9319
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10001114 [exp]	21.6	0.9132
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Lus10011345 [exp]	21.6	0.9315
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10017142 [exp]	26.8	0.9103
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10040044 [exp]	27.0	0.9276

Compare expression of checked genes

Lus10035979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.