Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51480 1033 / 0 ATGLR3.6 glutamate receptor 3.6 (.1) AT1G42540 999 / 0 ATGLR3.3 glutamate receptor 3.3 (.1) AT4G35290 910 / 0 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G17260 897 / 0 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT1G05200 862 / 0 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT2G32390 793 / 0 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT2G32400 696 / 0 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) AT2G29110 459 / 2e-146 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G29100 451 / 1e-143 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29120 431 / 9e-136 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012245 [exp] 1021 / 0 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10039671 [exp] 872 / 0 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10027171 [exp] 861 / 0 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10026552 [exp] 831 / 0 AT4G35290 1025 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10026553 [exp] 828 / 0 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10013837 [exp] 823 / 0 AT4G35290 1016 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10039672 [exp] 767 / 0 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10027170 [exp] 745 / 0 AT2G32400 970 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10031560 [exp] 744 / 0 AT2G32400 1008 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G102700 [exp] 1200 / 0 AT3G51480 1169 / 0.0 glutamate receptor 3.6 (.1) Potri.005G102600 [exp] 1020 / 0 AT3G51480 1012 / 0.0 glutamate receptor 3.6 (.1) Potri.005G253800 [exp] 1004 / 0 AT1G42540 1180 / 0.0 glutamate receptor 3.3 (.1) Potri.009G168300 [exp] 999 / 0 AT4G35290 1127 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Potri.002G007400 [exp] 982 / 0 AT1G42540 1178 / 0.0 glutamate receptor 3.3 (.1) Potri.002G230000 [exp] 886 / 0 AT1G05200 1198 / 0.0 glutamate receptor 3.4 (.1.2) Potri.014G152200 [exp] 875 / 0 AT1G05200 1210 / 0.0 glutamate receptor 3.4 (.1.2) Potri.002G229900 [exp] 773 / 0 AT2G32400 955 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Potri.018G012600 [exp] 474 / 8e-152 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012100 [exp] 474 / 9e-152 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3
Representative CDS sequence Show only first row Show all	>Lus10035980 pacid=23141205 polypeptide=Lus10035980 locus=Lus10035980.g ID=Lus10035980.BGIv1.0 annot-version=v1.0 ATGTCGTCTATTTTCCCTTTTATCTGCTCTCTAATTCTACTGCTGATGACTCAACATATTGCCTTCTTAGCCGCCGTCACCTCCTCCTCCTCCTCCTCCT CCTTGCCTCCTCCACCTGATTCCGTCAACGTCGGAGTTGTTCTGTCCTTCAGCTCCATCATCGGCAAAGTTTCAAAACTAGCAATCCAGGCCGCCTTCGA CGACGTCAACTCCCACCCATCTCTTCTTCCCCGGACCAAGCTACATCCTACTTTCCAAGACACCAATTTCAGCGGATTCCTTGGCATTGTTGAGGTATTG AGGATGATGGAGAGTGAGACGGTGACGGTGATTGGGCCACAGTCCTCAGTTACCGCTCACGTACTGTCACACATCGCCAATGAGCTCAAAGTCCCACTCC TCTCCTTCTCCGCCACCGATCCAACTCTCTCCTCCCTCCAGTTCCCCTTCTTCGTCATGACTTCCCGCAGCGACCTCTACCAGATGGCCGCCATCGCCGA CATCGTCGACTACTACGAGTGGAGGGAAGTCATCGCCATCTACTCCGACGACGACCACGGCCGCAACGGCATTGCCGCCCTGGGCGACCAGCTAGCTGCC AGGAGATGCAAGATTTCGTTCAAGGCGCGGCTCAGCCCGACTGCTACCAGGGAGGAGATCACTGACGTGCTGATTAAAGTCGCCCTTACCGAGTCTAGGA TTCTGGTGGTTCACGTCCCCGCATCTTGGGGTTCCACTGTGTTCGCCGTTGCACAGTATCTGGAGATGATGAACTCCGGCTACGTCTGGATAGCTACAAC CTGGCTCTCCACTATGCTCGATACCAATCTCAATCTCCCCACTGAGGCATTGGAAGATTTCCAGGGAGTTCTCACGCTGCGGATTCACACCCCGGATTCC CCCCGCAAAACAGAGTTCGTCTCTCGCTGGCCCAATCTCACCGCCGGCGATCATTTTGGGTTAAACACTTATGGCCTCTACGCCTACGACACGGTGTGGA TGCTGGCTAGAGCACTTGACGCTTTCTTCGCGCGTGCTGGAAACATATCTTTCTCCAAGGATTTACGGTTGAAGGGGCTCGGGGGAGGGGACTTGCACCT AGATGCCATGACCATCTTCAACGGCGGGGAACTGTTGCTAGAGAGCATCTTGGACGTCGATATGGAGGGTGTCACGGGTCCGGTCAAGTTCGACGGTCCT GACAAGAACAATTTGTTTCGCCCAGCTTATCAAGTCATCAATGTGATCGGGACAGGACATCGCAAAATTGGCTACTGGTCTAATCACTCAGGCCTCTCTA TTGTACCACCGGAGAAATTCTACTCCAAGCCGGTTAACCGATCAAGGTCCAGCCAGAAACTGGGCCCCGTTTTCTGGCCGGGGCAGACGACCCAGAGGCC ACGTGGATGGGTGTTCCCAAATAATGGGAGGCATTTGGTTATCGGAGTGCCCAACCGCGTCAGCTACCGGGAGTTCGTAGGCCAAGTATCTGGAACAACC CCCGATATGTTCAAGGGATACTGCATCGATGTTTTCATTGCAGCGGTGAATTTGTTGCCGTACGCGGTGCCGTATAAGCTGATCCCGTTCGGTGACGGAG TTGACAACCCGAGTTTGACGGAGCTGGTACGTCTCATCACCACTGGGGTCTATGACGGCGCTGTAGGGGACATCGCGATTATCACAAACCGAACCAAGAT GGCGGATTTCACGCAACCCTACGTGGAGTCTGGGCTGGTGGTGGTGGCGCCGGTGAGAACCAGGAACTCCAATTCATGGGCATTTCTCAGACCTTTCACA CCAGCCATGTGGGCCGTCACTGGAATCTTCTTCCTCATCGTTGGTGCAGTTATTTGGATATTGGAGCATCGCCTCAATGATGACTTCAGAGGCCCTCCTA GAAGACAAGTCACCACTATCTTATGGTTCAGCTTTTCAACCTTGTTCTTTGCTCACAGAGAGAACACTGTGAGCACTCTAGGTCGGGTGGTGCTGATCAT ATGGTTGTTCGTAGTTCTGATAATCAATTCAAGCTACACGGCTAGCCTGACCTCCATCCTGACAGTGCAGCAGCTGACTTCACCAATCAAAGGAATCGAA ACACTAAAAAGCAGCGACGACCCCATTGGTTACCAACAAGGTTCATTCGCCAGGGACTACCTAGTTAATGAGCTTGGGATCCATGAGTCTAGATTGGTTC CGCTCAAGGGTCCTGAAGACTGCGAATGGGCTTTGAAGGCTGGCCCTCACAAACGCGGTGGCGTTGCAGCTGTTGTCGACGAGCGAGCTTATCTTGAGCT CTTCCTTTCAACCAGATGCGACTTCAGTATCGTAGGCCAGGAGTTCACCAAGAATGGCTGGGGATTCGCTTTCCCGAGGGACTCTCCCTTAGCAATTGAC CTGTCGACTGCCATTCTAAAGTTGTCTGAAAATGGGGATCTCCAGAGGATCCACGATAAATGGCTGATGAGCATAGCTTGCAGCTCACAAAGCACGACCT TGCAGGTGGACAGACTTCACCTTGGCAGCTTTTGGGGACTTTTCCTCATCTGTGGTCTGGCTTGCCTACTAGCTCTCCTCCTGTATTTCCTCAACATTGT CAAACAGTTCAGCCGTCACAATGCAGACGACTCCCTCATCTCTTCCTCTCTTTCCCTCTCGTCCGCCTCTGCTCATCTTAAGACTTTCATTTCGTTCGCC AACGAGAAAGAGGAGGATGTGGTCAGCCGTTCCCAGAGGAGGCAACTTGAGAGAGCATCTATGAGAAGAGAGTCTGAAGCCAGCGATGGTGGCGAGATTT TAGATTCAAATTCAGTCCATCGCGTTCAAGTATCTTCAAACAAGGACGTGGGCACCCAAAACGGAGTTTAA
AA sequence Show only first row Show all	>Lus10035980 pacid=23141205 polypeptide=Lus10035980 locus=Lus10035980.g ID=Lus10035980.BGIv1.0 annot-version=v1.0 MSSIFPFICSLILLLMTQHIAFLAAVTSSSSSSSLPPPPDSVNVGVVLSFSSIIGKVSKLAIQAAFDDVNSHPSLLPRTKLHPTFQDTNFSGFLGIVEVL RMMESETVTVIGPQSSVTAHVLSHIANELKVPLLSFSATDPTLSSLQFPFFVMTSRSDLYQMAAIADIVDYYEWREVIAIYSDDDHGRNGIAALGDQLAA RRCKISFKARLSPTATREEITDVLIKVALTESRILVVHVPASWGSTVFAVAQYLEMMNSGYVWIATTWLSTMLDTNLNLPTEALEDFQGVLTLRIHTPDS PRKTEFVSRWPNLTAGDHFGLNTYGLYAYDTVWMLARALDAFFARAGNISFSKDLRLKGLGGGDLHLDAMTIFNGGELLLESILDVDMEGVTGPVKFDGP DKNNLFRPAYQVINVIGTGHRKIGYWSNHSGLSIVPPEKFYSKPVNRSRSSQKLGPVFWPGQTTQRPRGWVFPNNGRHLVIGVPNRVSYREFVGQVSGTT PDMFKGYCIDVFIAAVNLLPYAVPYKLIPFGDGVDNPSLTELVRLITTGVYDGAVGDIAIITNRTKMADFTQPYVESGLVVVAPVRTRNSNSWAFLRPFT PAMWAVTGIFFLIVGAVIWILEHRLNDDFRGPPRRQVTTILWFSFSTLFFAHRENTVSTLGRVVLIIWLFVVLIINSSYTASLTSILTVQQLTSPIKGIE TLKSSDDPIGYQQGSFARDYLVNELGIHESRLVPLKGPEDCEWALKAGPHKRGGVAAVVDERAYLELFLSTRCDFSIVGQEFTKNGWGFAFPRDSPLAID LSTAILKLSENGDLQRIHDKWLMSIACSSQSTTLQVDRLHLGSFWGLFLICGLACLLALLLYFLNIVKQFSRHNADDSLISSSLSLSSASAHLKTFISFA NEKEEDVVSRSQRRQLERASMRRESEASDGGEILDSNSVHRVQVSSNKDVGTQNGV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Lus10035980 [exp]	0	1
AT5G20950			Glycosyl hydrolase family prot...		Lus10023604 [exp]	2.0	0.8380
AT4G18260			Cytochrome b561/ferric reducta...		Lus10007333 [exp]	4.0	0.8308
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10007142 [exp]	7.7	0.7865
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008947 [exp]	8.4	0.7853
AT5G07800			Flavin-binding monooxygenase f...		Lus10003474 [exp]	11.3	0.7542
AT5G04360		ATPU1 ,ATLDA	PULLULANASE 1, limit dextrinas...		Lus10037943 [exp]	13.5	0.7916
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10036508 [exp]	14.5	0.7841
AT1G27750			nucleic acid binding (.1)		Lus10007756 [exp]	14.5	0.7444
AT1G11340			S-locus lectin protein kinase ...		Lus10006745 [exp]	14.7	0.7804
					Lus10002802 [exp]	14.7	0.6981

Compare expression of checked genes

Lus10035980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.