Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17525 677 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 214 / 4e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 205 / 7e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 205 / 7e-57 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G11690 194 / 3e-54 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G64583 192 / 1e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G48810 187 / 7e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 184 / 2e-50 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62910 182 / 2e-49 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 181 / 1e-48 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016688 [exp] 1147 / 0 AT2G17525 655 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 220 / 3e-62 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 220 / 4e-62 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 219 / 1e-61 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 196 / 8e-54 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 192 / 3e-52 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026558 [exp] 193 / 5e-52 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 191 / 9e-52 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 187 / 1e-50 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G102400 [exp] 766 / 0 AT2G17525 756 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 226 / 1e-64 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G217600 [exp] 217 / 4e-61 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G013300 [exp] 212 / 2e-59 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 210 / 3e-59 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G234500 [exp] 206 / 4e-57 AT1G74580 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 204 / 9e-57 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G131600 [exp] 190 / 1e-52 AT4G11690 632 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G271200 [exp] 190 / 2e-52 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G148700 [exp] 188 / 2e-51 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10035981 pacid=23141238 polypeptide=Lus10035981 locus=Lus10035981.g ID=Lus10035981.BGIv1.0 annot-version=v1.0 ATGTACGCCCACTTTCTCAGTCGTGTTCATCGTTTCTCCAAAGTATCGCGATTCAGAGAACATGCCCACCCAGAGATCCTTCCTATCGCCATTCACTCTC CTTTCTCTTCTACTTCTACTTCTTCCCTTTTGGTTCCCAGTCAGGAACACATATCAAATCTCATTTTGAACCAGAAATCCCCATCCCAAGCTCTTGGTAC CTTCAAATGGGCCTCAACCATCCCCAATTTCACTCACTCCCTCCCCACCTATCGTGCGCTTATCCACTCACTCTGTACCTTCCGGCGATTCGATGCTGTC GACCAACTGCTCGACGAAATGCCCGCATCCATCGGCGCACCCCCTGACGATGCTGTTTTCATTACCTTCATTCGAGGCCTTGGTAGGGCTGGCCTCCTTC ACCGTGTCGTCAAAGTGATCGACTTGGCTTCCAAGTTGCAGGCCAATCCTCCGTCTTTGAAGCTCTTCAACTCCGTACTCGATGTCCTCGTCAAGCATGA TATCGATTTGGCTCGGCATTTCGTTAGAAACAGGATGATGAAATGTGGAGTGCAGGGTGATGATTATACGTTTGGGATTCTGATGAAAGGTCTTTGTTTG ACAAATAGAATCGGTGATGGATTCAAGCTTTTGCAGCTCATCAAGTCTGCAGGTTCGAATCCAAACTCCGTTGTTTACAACACTTTACTCCATGCCCTTT GCAAGAATGGGAAAGTTGGAAGGGCCAGGAGCCTGATGAATGAGATTCAGGAACCCAACGACGTCACTTTCAACCTTCTAATATCGGCTTACTGTAAAGA GGATAACTTAGTTCAGGCACTTGTCATGCTGGAGAAGAGTTTCAGCCTAGGGTTTATACCCGATATTGTTGCAGTCACTAAGGTGGTGGAACTTCTTTGT AATCGAAGCCGTGTGACTGAGGCTGCTGAGGTATTAGAAAGATACAAGAGCAAGGGAGGTGATGTTGACCTCGTAGCGTGTAACACTTTGATCAAGGGAC TCTGCGGATCAGGAAAAGTTAAAGCTGCCTGTGGATACTTGAAGGAGATGGAACTAAAGGGATGCCTTCCCAATGTGGAGACGTACAATTTGTTGATATC TGGTTTCTGCGGATGCAGGATGTTGGACTCCGCTCTTGACTTGTTTGACGAGATGAAGGTGGCAGGGATCGATTGGAATCTTGATACATTTGATGAGCTT ATCAGAGGATTGTTCTCCGGCGGGAGGATTGAAGCCGGATTCAAGATTTTACAACTGATGGAGGAGAGGAAAGGAGGCTCCAAAGGTCGAATTAGTCCTT ACAACAGCGTGGTTTACGGGTTTTACAGGAAACAAATGTGGGATGAGGCTCTTGAGTTCTTGGTGAAGATGGAAAAGCTGTTTCCTAGGGCTGTGGAAAA GAGCTTGAGGATATTGGGGGATTGCGAGAAGGGTGCAATGGAGGAGGCAAAGAAGGTGTATGATGAAATGGTTGATGAAGGAGGGATGCCAAGTGCTCTG GTTTATGACTACTTAATCCATGGATTTTGTGAACAAGGAAGTGGGGACAAGGCATTTGAAGTGATGGAGGTAATGTTAGGGAGTGGTTACTGTCCTGATA AATCAGCTTTGAATGCGGTGATTGGGGAGTTATGTATCCAAGGAAAGGAAGATAGTGCAGTGAAAGTGGTGGAGGACATAGTTGGGAGAGGTTGGTTAGT GAGTGCTGGAAGCTATAGTAGAATAATATATGTGCTTTGTGGGAAAGAGAGGTATGGGAAAGCAGCTAGTGTGTTGGTGGAGAGCAAGATTGATCCAGAC TGGCAATCTATGCTATTCCGACTGAGTAGAGATGAAATCTGGCTCACAAACTATTCTACTTCAGAGCTAAATAATTTAGTGGATCGGATCATTAATTGA
AA sequence Show only first row Show all	>Lus10035981 pacid=23141238 polypeptide=Lus10035981 locus=Lus10035981.g ID=Lus10035981.BGIv1.0 annot-version=v1.0 MYAHFLSRVHRFSKVSRFREHAHPEILPIAIHSPFSSTSTSSLLVPSQEHISNLILNQKSPSQALGTFKWASTIPNFTHSLPTYRALIHSLCTFRRFDAV DQLLDEMPASIGAPPDDAVFITFIRGLGRAGLLHRVVKVIDLASKLQANPPSLKLFNSVLDVLVKHDIDLARHFVRNRMMKCGVQGDDYTFGILMKGLCL TNRIGDGFKLLQLIKSAGSNPNSVVYNTLLHALCKNGKVGRARSLMNEIQEPNDVTFNLLISAYCKEDNLVQALVMLEKSFSLGFIPDIVAVTKVVELLC NRSRVTEAAEVLERYKSKGGDVDLVACNTLIKGLCGSGKVKAACGYLKEMELKGCLPNVETYNLLISGFCGCRMLDSALDLFDEMKVAGIDWNLDTFDEL IRGLFSGGRIEAGFKILQLMEERKGGSKGRISPYNSVVYGFYRKQMWDEALEFLVKMEKLFPRAVEKSLRILGDCEKGAMEEAKKVYDEMVDEGGMPSAL VYDYLIHGFCEQGSGDKAFEVMEVMLGSGYCPDKSALNAVIGELCIQGKEDSAVKVVEDIVGRGWLVSAGSYSRIIYVLCGKERYGKAASVLVESKIDPD WQSMLFRLSRDEIWLTNYSTSELNNLVDRIIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G17525			Pentatricopeptide repeat (PPR)...		Lus10035981 [exp]	0	1
AT4G18540			unknown protein		Lus10013937 [exp]	3.0	0.7896
AT5G42450			Pentatricopeptide repeat (PPR)...		Lus10034408 [exp]	4.7	0.7688
AT2G15570		TRX-M3, GAT1, A...	THIOREDOXIN-M3, GFP ARRESTED T...		Lus10014069 [exp]	6.9	0.8318
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10023945 [exp]	13.4	0.7667
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10006570 [exp]	27.4	0.7758
AT5G45420	MYB	maMYB	membrane anchored MYB, Duplica...		Lus10039841 [exp]	30.4	0.7890
AT3G45230			hydroxyproline-rich glycoprote...		Lus10037404 [exp]	30.6	0.7857
AT3G61550			RING/U-box superfamily protein...		Lus10036404 [exp]	38.3	0.7650
AT1G42960			unknown protein		Lus10016034 [exp]	43.3	0.7125
AT3G17130			Plant invertase/pectin methyle...		Lus10002739 [exp]	44.0	0.7601

Compare expression of checked genes

Lus10035981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.