Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21630 379 / 1e-117 Calcium-binding EF hand family protein (.1.2) AT1G20760 246 / 6e-70 Calcium-binding EF hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016689 [exp] 1066 / 0 AT1G21630 806 / 0.0 Calcium-binding EF hand family protein (.1.2) Lus10012248 [exp] 283 / 4e-83 AT1G20760 886 / 0.0 Calcium-binding EF hand family protein (.1) Lus10016028 [exp] 167 / 4e-43 AT1G20760 770 / 0.0 Calcium-binding EF hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G102200 [exp] 631 / 0 AT1G21630 887 / 0.0 Calcium-binding EF hand family protein (.1.2) Potri.007G063200 [exp] 552 / 0 AT1G20760 669 / 0.0 Calcium-binding EF hand family protein (.1) Potri.002G008600 [exp] 313 / 4e-94 AT1G20760 825 / 0.0 Calcium-binding EF hand family protein (.1) Potri.005G253000 [exp] 299 / 4e-89 AT1G20760 629 / 0.0 Calcium-binding EF hand family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035982 pacid=23141012 polypeptide=Lus10035982 locus=Lus10035982.g ID=Lus10035982.BGIv1.0 annot-version=v1.0 ATGAAGGTCGAAGAATTGGAGAAGGAAATTTTGGAATCTAGACAGAAGATCGATTTCTTTCGTGCTAAGATGCAAGAACTGATTCTATATAAGAGCCGTT GTGATAACCGCCTTAATGAGGTCATTGAAAGGGTGGCTGCAGATAAACATGAGGTTGATGCTTTAGCTAAGAAGTATGAAGAGAAATACAAGCAGGCTGG AGATGTAGCCTCTAAGTTAACGATTGAGGAGGCCACCTTTCGTGACATTCAGGAGAAAAAAATGGAAATCTACCAGGCAATTGTCAAAATGGATGAAGGA GAGACTGCTGCTGGTGCCCTTAAGGAGCGAGCGGAGCGTATTCATTCTAGTCTAGAAGAACTAGTGAGAAGTTTGAATGAACGATGCAAACAGTATGGAC TGCGTGCTAAACCTATGTCACTGGTTGAGCTTCCGTTTGGCTGGCAGGCAGGAATACAAGGAGGAGCAGCTGACTGGGATGAACATTGGGATAAGTTTGA AGATGAAGGATTTACGTTTGTCAAAGAGTTGACTACGGAAGTGCAGAATATCGTGGCGCCACCAAAACCAAAATCAATTCGAAATGTGAAAGCTGTAATG GAAGGGGGTTTGAGCTTTTCTACATCCAATGCTGATGCGAAGGTGGAGAAGATTTCTGGTACAGGTGACTCAGTTCCAGATAAAGAATCAGCACACAGTG AAACTGAGAATGGTAGCGCAAGAAGCCCTCCTGGAAGTCCTAAAAACGGCAGAACAGAAAACCAGACTCGTGAATTCCAGGATTCACCCAAAGGGAATGC TGGCAGGGATGGTTCACCGCATGGCAGGGGAACTTCAAGTGGCTTGTGCAGTGATGTGGCTGATACTGCTAGTGTATTTTCTGCTGATAAAAATGTTGAT GAAGCTACATGGGGTAGATTTGACAGCCATTATGATAATGAGTCAATTTGGGGGACCGAATCCGCAGGTGGAAAGGAAGCTGATCTTGAGAGCCATACAG ACGGTTCTTTATTTGGCACTGGTGAATTCGGCCTGAATCCAATAAAGACAGGAACCTCAAAGGCAGACAATACCTTCTCTGGGAAGAGTTCGTTCATGTT TGATTCAGTCCCAAGCAGCCCCGCCTATAACCCGGGGAATAGCTTTTATACGTTTGATTCTATTCCTAGTACACCTGCTTATAACCAGGAAAAGAGCTCA TTTGGGTTTGATTCTGTACGTGGAACCCCTGCCTATAACCAAGGGAAAAGCTCTATTGTGTTTGATTCAGTACCAAGCACCCCATCCCATGGCCAGGGAA TGAGCTCTTTCGGATTTGCGGACTCTGTTCCAGGCACCCCTTCGTATGGCCTTGGCGGGAAAGGACCGTTCTCGTTTGCTGATTCTGTCCCAGGCACTCC TGCCTATGATTTTGGCAACTCTCGAAGACTCAGTGAAGGCACAGACGATCACTCCTTTGACAACTTCTCCAGGTTTGATTCATTTAATTTGAATGAAAGC AGCAGCTCATTCCCTTCTTCAGGGCCTTCTCTTGCAAGGTTTGATTCTGTGAGGAGGACGAGAGAATCTGAACAAGGGTTTGGGGCACCGTCGAGGTTTG ATTCGTTTAGAGAGTCTGGAGACTCGGATCTTGGTCAGGGTTTCTCAAGGTTTGACTCATTCAGGGACTCTGATCAGAGCCATGTCCTTCCGAGTTTCGA TTCTTTTGACAATGGTCAAGGATTCCCTTCAAGGTTCGATTCTTTCAGAGATTCTGGAGATTTCGATCACGGGCGGGGGATTACAAGGTTTGATTCATTT GGTGGTCAGAGCTCTGGATTTGATTACGAGCATGGCTCAAAGGACTCTTTGAACAAGCATGGGTTTGATGATACTGATGCATTTGGGTCAAGTGGACCGT ATCGAACATCAACGTTTGACGGTGGTGCTACTCCAAAGAGAAGTTCCGACGAGTGGAAATCCTTCTAG
AA sequence Show only first row Show all	>Lus10035982 pacid=23141012 polypeptide=Lus10035982 locus=Lus10035982.g ID=Lus10035982.BGIv1.0 annot-version=v1.0 MKVEELEKEILESRQKIDFFRAKMQELILYKSRCDNRLNEVIERVAADKHEVDALAKKYEEKYKQAGDVASKLTIEEATFRDIQEKKMEIYQAIVKMDEG ETAAGALKERAERIHSSLEELVRSLNERCKQYGLRAKPMSLVELPFGWQAGIQGGAADWDEHWDKFEDEGFTFVKELTTEVQNIVAPPKPKSIRNVKAVM EGGLSFSTSNADAKVEKISGTGDSVPDKESAHSETENGSARSPPGSPKNGRTENQTREFQDSPKGNAGRDGSPHGRGTSSGLCSDVADTASVFSADKNVD EATWGRFDSHYDNESIWGTESAGGKEADLESHTDGSLFGTGEFGLNPIKTGTSKADNTFSGKSSFMFDSVPSSPAYNPGNSFYTFDSIPSTPAYNQEKSS FGFDSVRGTPAYNQGKSSIVFDSVPSTPSHGQGMSSFGFADSVPGTPSYGLGGKGPFSFADSVPGTPAYDFGNSRRLSEGTDDHSFDNFSRFDSFNLNES SSSFPSSGPSLARFDSVRRTRESEQGFGAPSRFDSFRESGDSDLGQGFSRFDSFRDSDQSHVLPSFDSFDNGQGFPSRFDSFRDSGDFDHGRGITRFDSF GGQSSGFDYEHGSKDSLNKHGFDDTDAFGSSGPYRTSTFDGGATPKRSSDEWKSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21630			Calcium-binding EF hand family...		Lus10035982 [exp]	0	1
AT1G77420			alpha/beta-Hydrolases superfam...		Lus10034331 [exp]	1.4	0.8848
AT4G19670			RING/U-box superfamily protein...		Lus10018293 [exp]	6.3	0.8203
AT1G77420			alpha/beta-Hydrolases superfam...		Lus10041441 [exp]	6.9	0.8008
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10013186 [exp]	15.3	0.8072
AT1G22870			Protein kinase family protein ...		Lus10007901 [exp]	17.0	0.7961
AT1G10650			SBP (S-ribonuclease binding pr...		Lus10013027 [exp]	17.0	0.8073
AT4G17830			Peptidase M20/M25/M40 family p...		Lus10040090 [exp]	22.7	0.8121
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10037448 [exp]	23.5	0.7930
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Lus10039642 [exp]	23.9	0.7916
AT1G10390			Nucleoporin autopeptidase (.1....		Lus10033254 [exp]	24.0	0.7287

Compare expression of checked genes

Lus10035982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.