Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21630 207 / 5e-57 Calcium-binding EF hand family protein (.1.2) AT1G20760 193 / 1e-52 Calcium-binding EF hand family protein (.1) AT4G05520 81 / 9e-16 ATEHD2 EPS15 homology domain 2 (.1.2) AT3G20290 76 / 4e-14 ATEHD1 EPS15 homology domain 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016689 [exp] 850 / 0 AT1G21630 806 / 0.0 Calcium-binding EF hand family protein (.1.2) Lus10012248 [exp] 200 / 8e-55 AT1G20760 886 / 0.0 Calcium-binding EF hand family protein (.1) Lus10016028 [exp] 198 / 3e-54 AT1G20760 770 / 0.0 Calcium-binding EF hand family protein (.1) Lus10043181 [exp] 81 / 7e-16 AT3G20290 936 / 0.0 EPS15 homology domain 1 (.1.2) Lus10032563 [exp] 80 / 1e-15 AT3G20290 924 / 0.0 EPS15 homology domain 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G102200 [exp] 517 / 6e-171 AT1G21630 887 / 0.0 Calcium-binding EF hand family protein (.1.2) Potri.007G063200 [exp] 496 / 2e-163 AT1G20760 669 / 0.0 Calcium-binding EF hand family protein (.1) Potri.005G253000 [exp] 195 / 4e-53 AT1G20760 629 / 0.0 Calcium-binding EF hand family protein (.1) Potri.002G008600 [exp] 192 / 6e-52 AT1G20760 825 / 0.0 Calcium-binding EF hand family protein (.1) Potri.011G022300 [exp] 82 / 4e-16 AT4G05520 876 / 0.0 EPS15 homology domain 2 (.1.2) Potri.001G356300 [exp] 77 / 8e-15 AT3G20290 938 / 0.0 EPS15 homology domain 1 (.1.2) Potri.010G191400 [exp] 43 / 0.0003 AT4G13440 127 / 3e-37 Calcium-binding EF-hand family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035983 pacid=23141097 polypeptide=Lus10035983 locus=Lus10035983.g ID=Lus10035983.BGIv1.0 annot-version=v1.0 ATGGCGGGGCAGAACCCAAGTGTTGATCTGTTCGACGCATATTTCAAGAGAGCAGATTTGGATGGCGACGGTCAGATCAGCGGCGCTGAAGCAGTTGCTT TCTTCCAAAGTTCCGGTCTTCCCAAGCAAGTTCTTGCCCAGGTGTGGATGTATGCTGACCAGAGAAAAGCTGGATACCTTGGACGACAAGAATTCTACAA TGCTCTCAAGCTTGTTACTGTGGCACAAAGTAAACGGGACCTGACCCCTGATATCGTGAGGGCTGCATTGTATGGTCCCGCTTCTTCAAAAATCCCAGCT CCTCAGATTAATCTTGCAGCCACACCTGCTCCTAAAGTGGCAGCCCCTGTTTCGCAGTTTGTTGGCTCAACTTCAGCACCATCTCAGAATGTTGGGATCA GACCAACCCAGCTGCCTGCTCAAGCTAACAAGCAATTCTTACCATCTCAGCAAAACCAGTTTGTGAGACCACTGCAGGCCATGCCTTCCAACTCCACATC CCACCAACACCAGAATTTCCCGAGGCCAGTTATTCATAGTGGTGCCCCTCCTGCAACTCGCTCTTTGGGTTCAGGCATCTCAACCGATTGGCTAAGTGGA AGTATGAGTGCTCCACCATCTCAACCTCCAAATCAAGGGATTCCTCCTCCTGCCAGACAAGATGGAGTTGTGCCCTCAGCTTCTAGCATGACAACCTCTG TCCAAACCAGACCACCGGTGCCCACTGGGCAGATACCTTCATCACAACCACAAGCTCAAGATCCAGCTATTTTCTCTAAAACCCCTGTAGCTAATGATTC CAAATCGTTTGCTGTTTTGGAGAATGGTTTTAATTCTGGCTCAAGTTTTGGTAATGTCTTCTCTGCTACTGCTGTCAACAGTTCTGCTGCTTCATCAGCG ATTGTGTCTTCTGTTGATCCCCAAATTTTAGTTAAGCCAAGTCCCCTTGGCTCTTTTCAGAACAATGCTCAGCAACTTGTTGGTGGTCAGCAAACAGGAA AACAAATCCAATCAGTTGCAGGTCAAGTTACTAATCCACGTCCCTCGGGCGGTTTTCCTGTTGTAGCCGGAAATGTTACTTCCGGTCAATCTCGTAGTTT ATGGCCAAGGATGATTCCTGCCGACATCCAGAAGTATTTGAAAGTGTTTGTACAAGTAGACACTGATAGAGATGGAAAGATAACTGGTGAACAGGCACGC AATCTCTTCTTAAGCTGGAGGCTTCCAAGAGAGGTATTGAAACAGGTCTGGGATTTATCTGATCATGATAACGACAGCATGCTTTCTGCAAAGGAGTTCT GCGTTGCTCTCTATTTGATGGAACGTTACAGAGAAGGTCGTCCGCTTCCTCCGACTCTCCCAAGCTCAGTAATTTCTGACGAAGCCCTGGTGTCTGCTAC CAGCCGCCCAGCTGGTTCATATGGTGGTGGAGCATGGGGACCTGTTCCTGGTCCACGACAACCACAAGTAGGGGCTGGTACTCGACCAATGCAGCCTGGC GCACCAAGGCCACCACGGCCTCCGTCTGGTCCTCATGCTGAGGAAAAGCAGCCTAGTCAGCCAAAACCAAAGGTTCCGGTGCTGGAAAAACATCTTGTGG ACCAACTTACCCAAGAGGAGCAGGATTCTCTCAACTCAAAATTCCAAGATGCGTCTCAGGCTGATAAAAAGGCAGATGTTGAAGTCAGTTTCAAGTAA
AA sequence Show only first row Show all	>Lus10035983 pacid=23141097 polypeptide=Lus10035983 locus=Lus10035983.g ID=Lus10035983.BGIv1.0 annot-version=v1.0 MAGQNPSVDLFDAYFKRADLDGDGQISGAEAVAFFQSSGLPKQVLAQVWMYADQRKAGYLGRQEFYNALKLVTVAQSKRDLTPDIVRAALYGPASSKIPA PQINLAATPAPKVAAPVSQFVGSTSAPSQNVGIRPTQLPAQANKQFLPSQQNQFVRPLQAMPSNSTSHQHQNFPRPVIHSGAPPATRSLGSGISTDWLSG SMSAPPSQPPNQGIPPPARQDGVVPSASSMTTSVQTRPPVPTGQIPSSQPQAQDPAIFSKTPVANDSKSFAVLENGFNSGSSFGNVFSATAVNSSAASSA IVSSVDPQILVKPSPLGSFQNNAQQLVGGQQTGKQIQSVAGQVTNPRPSGGFPVVAGNVTSGQSRSLWPRMIPADIQKYLKVFVQVDTDRDGKITGEQAR NLFLSWRLPREVLKQVWDLSDHDNDSMLSAKEFCVALYLMERYREGRPLPPTLPSSVISDEALVSATSRPAGSYGGGAWGPVPGPRQPQVGAGTRPMQPG APRPPRPPSGPHAEEKQPSQPKPKVPVLEKHLVDQLTQEEQDSLNSKFQDASQADKKADVEVSFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21630			Calcium-binding EF hand family...		Lus10035983 [exp]	0	1
AT1G21630			Calcium-binding EF hand family...		Lus10016689 [exp]	1.4	0.9470
AT3G13530		MAPKKK7, MAP3KE...	MAP3K EPSILON PROTEIN KINASE, ...		Lus10010209 [exp]	3.5	0.9418
AT1G20760			Calcium-binding EF hand family...		Lus10012248 [exp]	5.7	0.9267
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10033077 [exp]	6.6	0.9420
AT5G53480			ARM repeat superfamily protein...		Lus10023246 [exp]	9.7	0.9122
AT5G16280			Tetratricopeptide repeat (TPR)...		Lus10021264 [exp]	12.0	0.9178
AT5G42220			Ubiquitin-like superfamily pro...		Lus10034563 [exp]	12.3	0.9320
AT2G07360			SH3 domain-containing protein ...		Lus10008548 [exp]	12.4	0.9271
AT3G62900			CW-type Zinc Finger (.1)		Lus10009815 [exp]	13.0	0.9152
					Lus10002928 [exp]	18.5	0.9239

Compare expression of checked genes

Lus10035983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.