Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35520 346 / 1e-99 MLH3, ATMLH3 MUTL protein homolog 3 (.1) AT4G09140 81 / 5e-15 ATMLH1 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) AT4G02460 80 / 8e-15 PMS1 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016691 [exp] 2391 / 0 AT4G35520 360 / 8e-105 MUTL protein homolog 3 (.1) Lus10007866 [exp] 83 / 9e-16 AT4G02460 763 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Lus10030376 [exp] 81 / 4e-15 AT4G02460 963 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Lus10033274 [exp] 75 / 4e-13 AT4G09140 1066 / 0.0 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) Lus10034734 [exp] 69 / 3e-11 AT4G09140 504 / 3e-167 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G101900 [exp] 448 / 1e-135 AT4G35520 763 / 0.0 MUTL protein homolog 3 (.1) Potri.014G130800 [exp] 82 / 2e-15 AT4G02460 936 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Potri.019G078700 [exp] 74 / 5e-13 AT4G09140 1071 / 0.0 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08676 [flax] [poplar] MutL_C MutL C terminal dimerisation domain CL0329 [flax] [poplar] S5 PF01119 [flax] [poplar] DNA_mis_repair DNA mismatch repair protein, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10035985 pacid=23141005 polypeptide=Lus10035985 locus=Lus10035985.g ID=Lus10035985.BGIv1.0 annot-version=v1.0 ATGCGGCAAGCAATGAGGGGCATAGAACCATTGCCGCTTCTACTCCGCAATTCAATCCGCTCTGGGGTTATTGTGTTCGACTTTACAAGGGTTGTGGAGG AGCTCCTCTTCAACAGCTTGGATGCTTCTGCTACTAAGGTGTCCATCTTTGTCGGTGCTGAGACTGGCTGTGTTAAAGTGGTGGACAATGGTTCTGGAAT CTCTAGAGATGGATTGATCTTGTTGGGTGAAAGATATGGGGGATCATGTAGTTGTTCTACTTACATTGCTTGGGATGTTTCTGTTCCAACAGTTACTTCA AAGCTTTGTAGTGACACCTTTGGATTCCGAGGAGAAACGTTGGCTTCAATCTCTGATGTCTCGTTATTGGAAATTGTAACAAGAACCCGTGGAAGACCAA ATGGTTATCGGAAGGTCTTAAAGGGATCTAAGTGCTTATATTTTGGAATTGATGATAATAGAAAAGATGTTGGTACAATAGTTGTTGTTCGGGATTTGTT TTACAACCAGCCTGTGAGGAGAAAATTTATTCAGTCCAGTTCTAAGAAGGTATTGCAGTCCGTCAAAAAATGTGTCCTTCAAGTTGCCCTTGTCCACTCA AGGGTCTCCTTTCAAATCATTGATATTGAAAGTGAGAAAGAACTCCTCTCCACTTATCGCTCTTCTGCCATGTCAATTTTGATGAGTGACTATGGGATTA ATGAAGTCAACTCTCTTCATAAGCTTGATTTTAGCGATGGTTTCTTAAGCCTCTCAGGCTACATAACTTGTCCTTCTGATGATTTTTCTGCAAAGACCTT CACAATATCAGACATCAACTCACGGTTTGTCTTCAAAGGACCAATTCACAAGTTGCTTAATCACTTGGCCATGACGTTTGAAGTTCTGGATTCATGGGGT GCAATGTCTGAAAAAGGGAAGAGAAGCAGAGCTCAAGTATGCATAGCCTACATAATGAATTTATATTGCCCGAGAGACCTTTATGATCTAACTCTCGAGC CATCAAAGACTTATGCTGATTTCAAGGATTGGGGTCCCATTCTTACCTTTATTCAGAAGGCCGTTCAACAAGTGTGGAGCAAGATTCTTTCTGGAGAAAA CTCAAGTCACAGAGTAGACCTTCACAGTACACTCTGGAAGGGAAATGATGATATGATGTCAACAAAGGAAGGCCATGATTTGGATGTAGTTTTGTCGGAG ACTTCAGAGGTTGCGAGCGACAAATTTCAAAGACCACAATATTACATTGCTTATTCTCCTGTTGTAAATCTGAAGAAGCATCCTGATGAAATTTATAACG GGGACTATAAAGAAGCTACATATGAAGAATTTGAATTGGATTTTACTGAGTTAAAAGAGCAACAAGTAGATACAAGATATCCTTACCAGAGTGGCTTCTC AATGCTAGATGTAGCTGATTGTGGAAATATACCTCGGGGGACCCTGGCGTGTAACAGTAATCTTCTTGCATCACATAACAGTTTTGACCTTCCTGACGAT ATCCTTGAAGAGAGACATGATATAATGCCAACGTACAGTGGTGACTTGGCTGGAACTCATCTAAGTTCAGTCTGGCAGAATGACTCCTCTAAAATTGAGT CAGCTAAGATGGAATTCTCTTCGGATCATGAAACATGGAGAAAACAACTAGAGACTAGTGTAAGTGGCAACAATCGCTACAGGAATGATGGTGATTTTAC ATTACAAGAATTTGAAGTGGATGTTTCTGATTTCAATGAAGAAGTAGAAATGAGATGTGCCTACCAAAGTGGCTTCTCAATGCAATCCAAGGATGTTATG GACCAAGACTACTGCTCTCCTCTTTTCACATCTCGTAACAGTTTTGAGTTTTCTGATGACATATTCATCGAAGATAGAGATAACATCAGACAGAAATACA GTGATGACATGGAGGGAAATCCCTTAAGCTCCGACTGGCCAAATGAGTTCCCCGAAAATGAGTCAGGTAACATTACTTTATCTTCAGATCATGAGATATC GGATAAACAACTGAAGTTTGGTGAAAGGGGCAGAGTTCCTTTCTTGCATGGATGCTCATTTATGAGAAGCCCGTCAAGTAAGAAGGGTTTGCTAAATAGT CAGGAAGAAGCAGAACATCCAATTTCAGAATCCCACTATCCTGATGACAAATTCCTAGAAGATACACATAACGACAGACATAAATACAATGATGACATGG ATGGAAATCTTGTAAGCTCAGACTGGAGTAATGAGTACCTTAATGATGGCTCAGCCAAGAATGTTTCATCTTCAAATAATGAAGTGTGGAGTAAACAGCT GAAGATTGGTGAAAGTGCGAAAGACCATTTCTTCCGTGGTCGCTCACGAACGAGAAGCCTGTCAGGTAAGGGTCTGCTAAATTGTGAGGACGAAACTGAA GTTACAGTTGTGGAACCCCTGGTTAAAAGGAGGCGGGTTTGCTTCAATAAAAACGTAGATGTAATAGAAGATGAGATTAACAATCAGAGGGATGATATCC TTTTTGGGCAGGGAGAGCAGACTTTTACTCAAGGTACGGAACTTCAATCTGATTTTGTCCCACATATGAGGGGGAGTATTTCATCAGGAAATAAATTCCC TAGGTCCAACCGCGATTCAGAAACTTCAGATTCCTTACTTGAGGCCTGTTGGGGCGTTAAGAACTTCCCCCAGGATGCAACAGACGGCTATGAAAAGGGG AAAAACCATTGTCATCTAGTTGGCACCAAGAAGACTCGGTTGTTATCCTTACATCGGCCTCACATGTCACGAGATAAGGTGGACTGGTTACAGTTGGACT TGCAGTCCCAAGATGAAAATAGTTATGATAAATACAGTGAGAAATGGGATAAAGTAGGATATCGAAGTGGGAAGAAAGATCTCCTGAGCAACTACTCCAG AAGAAGCCATTCAGCTCCACCATTTTATAAGCAGAAGAAGAAGTTTATTTCCTTGAATGGTTCACTCTCAGTAGAAAGAAAACCTCAGGCTCATTTTGTG CATGATCAGGATGCAAGACGTATGAATACTTGTATTTTTGCAGAGAACAAAATTACTTATCTTGAACCAAATAGCATCCGAGAACTGAATTCAACTGCCA GACCAGCAATGAAGAATGAACAGAGTACCGTGCCACCAATTGAAGAGGGTCTGGAAGTAAAAATGGTTGAGCAACAATGCACAGTGGGTAATAATTCTGC CGACTTTACTTCAAGTGGAAGCAGAGAGGTCGAGCATTTCACCAAGTGGAGGAATTCTGCGCAAGAGAACAGAACAGCATGTGATGGTGACAGTCATCAC AGCATACTTGACATAACTTCGGGGTTCTCAAGTCTGACTGGCAGTCTACTTATTCCAGAATCTCGGCGTACAAACTTTCTTAAGCAGGCTAAGGTGCTTC AGCAAGTGGATAAGAAATTCATTCCAGTGGTTGCTGATGGGACACTCGCTGTTATAGACCAGCATGCAGCAGATGAAAGGATTCGACTGGAGGAACTCCG AGACAAGGTATTAACTGGAAAGGCAAGGACAATATCCTATCTAGATGCTGAACAGGAGCTGATCCTTCCAGAGTTTGGATATCAGCTTCTTGCTGATTAT GCTGATCAAGTAAGAGACTGGGGATGGATCTGCAACATGCGGCCTCAAAATTCTGGGACATTTAATAAGAACTTGAATGTCATGCACCAACACAGGGCAA TGGTGACACTAATTGCGGTACCCTGCATTTTAGGAGTAAAATTGTCTGGTGGAGATCTACTGGAATTTCTTGAGCAGCTTGCTGATACTGATGGTGCGTC AACTGTACCACCATGTATTGTGCGAATCCTGAATCTTAAAGCGTGCAGAGGTGCGATCATGTTTGGCGATTCCTTGCTGCCATCGGAATGTGCTCTAATC GTGGAAGAGCTGGAGAAGACTGAACTCTGTTTTCAATGCGCTCATGGTCGACCCACAACTGTGCCACTGGTCAACTTAGCTACATTGCACTGTGAGATTG CCGCTTTGATGAAGAACGATGATTCTGTTCTAAGACGGCAGCAGATCGGGATCAGTAGAGCGCTGCAGCGTTTAAATGATGCTGGAGATATGCAACCAAA CACAGTAAAGTAG
AA sequence Show only first row Show all	>Lus10035985 pacid=23141005 polypeptide=Lus10035985 locus=Lus10035985.g ID=Lus10035985.BGIv1.0 annot-version=v1.0 MRQAMRGIEPLPLLLRNSIRSGVIVFDFTRVVEELLFNSLDASATKVSIFVGAETGCVKVVDNGSGISRDGLILLGERYGGSCSCSTYIAWDVSVPTVTS KLCSDTFGFRGETLASISDVSLLEIVTRTRGRPNGYRKVLKGSKCLYFGIDDNRKDVGTIVVVRDLFYNQPVRRKFIQSSSKKVLQSVKKCVLQVALVHS RVSFQIIDIESEKELLSTYRSSAMSILMSDYGINEVNSLHKLDFSDGFLSLSGYITCPSDDFSAKTFTISDINSRFVFKGPIHKLLNHLAMTFEVLDSWG AMSEKGKRSRAQVCIAYIMNLYCPRDLYDLTLEPSKTYADFKDWGPILTFIQKAVQQVWSKILSGENSSHRVDLHSTLWKGNDDMMSTKEGHDLDVVLSE TSEVASDKFQRPQYYIAYSPVVNLKKHPDEIYNGDYKEATYEEFELDFTELKEQQVDTRYPYQSGFSMLDVADCGNIPRGTLACNSNLLASHNSFDLPDD ILEERHDIMPTYSGDLAGTHLSSVWQNDSSKIESAKMEFSSDHETWRKQLETSVSGNNRYRNDGDFTLQEFEVDVSDFNEEVEMRCAYQSGFSMQSKDVM DQDYCSPLFTSRNSFEFSDDIFIEDRDNIRQKYSDDMEGNPLSSDWPNEFPENESGNITLSSDHEISDKQLKFGERGRVPFLHGCSFMRSPSSKKGLLNS QEEAEHPISESHYPDDKFLEDTHNDRHKYNDDMDGNLVSSDWSNEYLNDGSAKNVSSSNNEVWSKQLKIGESAKDHFFRGRSRTRSLSGKGLLNCEDETE VTVVEPLVKRRRVCFNKNVDVIEDEINNQRDDILFGQGEQTFTQGTELQSDFVPHMRGSISSGNKFPRSNRDSETSDSLLEACWGVKNFPQDATDGYEKG KNHCHLVGTKKTRLLSLHRPHMSRDKVDWLQLDLQSQDENSYDKYSEKWDKVGYRSGKKDLLSNYSRRSHSAPPFYKQKKKFISLNGSLSVERKPQAHFV HDQDARRMNTCIFAENKITYLEPNSIRELNSTARPAMKNEQSTVPPIEEGLEVKMVEQQCTVGNNSADFTSSGSREVEHFTKWRNSAQENRTACDGDSHH SILDITSGFSSLTGSLLIPESRRTNFLKQAKVLQQVDKKFIPVVADGTLAVIDQHAADERIRLEELRDKVLTGKARTISYLDAEQELILPEFGYQLLADY ADQVRDWGWICNMRPQNSGTFNKNLNVMHQHRAMVTLIAVPCILGVKLSGGDLLEFLEQLADTDGASTVPPCIVRILNLKACRGAIMFGDSLLPSECALI VEELEKTELCFQCAHGRPTTVPLVNLATLHCEIAALMKNDDSVLRRQQIGISRALQRLNDAGDMQPNTVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Lus10035985 [exp]	0	1
AT1G77800			PHD finger family protein (.1....		Lus10024778 [exp]	2.8	0.8092
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10001121 [exp]	3.7	0.8225
AT1G18600		ATRBL12	ARABIDOPSIS RHOMBOID-LIKE PROT...		Lus10007614 [exp]	3.7	0.7748
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Lus10001953 [exp]	6.0	0.8155
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10000540 [exp]	8.1	0.8135
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022878 [exp]	9.4	0.7976
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10019399 [exp]	13.0	0.8089
AT1G18750	MADS	AGL65, AGL102	AGAMOUS-like 65 (.1.2)		Lus10019089 [exp]	14.0	0.8028
AT2G45730			eukaryotic initiation factor 3...		Lus10033150 [exp]	16.3	0.7691
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10020208 [exp]	17.3	0.7877

Compare expression of checked genes

Lus10035985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.