Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10620 630 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G57180 374 / 7e-122 BPG2 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G47450 94 / 6e-20 RIF1, ATNOA1, ATNOS1, NOS1 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G41670 44 / 0.0002 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016692 [exp] 641 / 0 AT4G10620 501 / 1e-174 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000122 [exp] 486 / 2e-171 AT4G10620 346 / 9e-117 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031030 [exp] 392 / 8e-129 AT3G57180 731 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10035420 [exp] 392 / 1e-128 AT3G57180 732 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031160 [exp] 82 / 5e-16 AT3G47450 719 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10031736 [exp] 56 / 7e-08 AT3G47450 622 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G010400 [exp] 712 / 0 AT4G10620 695 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G044700 [exp] 379 / 2e-123 AT3G57180 750 / 0.0 BRASSINAZOLE\(BRZ\) INSENSITIVE PALE GREEN 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G124900 [exp] 97 / 7e-21 AT3G47450 727 / 0.0 RESISTANT TO INHIBITION WITH FOSMIDOMYCIN 1, NITRIC OXIDE SYNTHASE 1, NO ASSOCIATED 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035986 pacid=23141062 polypeptide=Lus10035986 locus=Lus10035986.g ID=Lus10035986.BGIv1.0 annot-version=v1.0 ATGGTAATTTCTCGAAGCCTTTCGGTCGCAAAATCAAAGCTTAAGCCCCTCTTCTCCCTTTCTCGCTTCTCCCAAGCTCTGCAAAACTCTCCTTCTATAC CCCCTACTCCTTCATCTCCCACCTCCTCTTCTCCTTTCACTCCATCGTATTTCTCTACAGCTCCTGCAAAACCTAAGCAGCCTTCTTCTTCTTCATCTTC TTCTTTGTTCCTCTCGCGCGACGGCAATGTCGACGGTTCCACTCCTTCCGTGCACTTTTGCCCTGGCTGCGGCATTCATATGCAGGATTCCGACCCCAAA TATCCAGGATTCTTCGTCAAGCCTTCTGCCAAGGATCCCAATTGTTATAAACCCAGTGGGCGGTTTGTACCCATTCCGCTAGAGTCGCAAGTCTCCAGTT CTCTGAAAAGCGGTTCCGTAATTGAATCGGAAAGAGACTGCTCTGCTGCTTCGGCTTTTGACAAGTTGCTGGAGAGGCCGGTTGTGTGCGCCCGTTGTCA CTCGTTGAGACACTATGGAAAGGTTAAGGATCCATCTCTGGAGAATCTGTTGCCTGAATTTGATTTTTACCATACTGTAGGAAAACGTTTGGTTTCATCT ACAGGGGCCAGGACGGTGGTCCTATTGGTTGTGGATGCTTCCGATTTCGACGGGTCATTTCCAAAAAGGCTTGCTAAGCTGGTTACTGAGGCAATTGATG AGAACTATACCAACTGGAAAGAAGGGAAATCTGGGAATGTACCTAGGATAGTTTTGGTGGTTACAAAGATTGATTTGTTACCAACTTCTTTGTCACCAAC TCGATTTGAGCATTGGGTTAGGCAGAGAGCTAGGGATGGTGGTGCTGATGTTATTAAGAAAGTTCATTTTGTGAGTCCTGTTAAGAATTGGGGGCTGAAG GATTTGGTGGAGGACGTCAAAGAACTGGCAGGGGCTAGAGGACATGTATGGGCTGTTGGAATGCAGAATGCAGGAAAGAGTACTTTGTTAAATGCGATGG CCAAATGTACTGCTGGTGGAGGAGGAGTTCAACCAAAGATAACTCATTTGACAGAGGCGCCTGTGCCTGGAACAACTCTTGGTATAGTCAGAGTCGACGG TCTTCTTCCTGGAAACACAAAGGTGTTTGACACTCCTGGACTTCTCAACCCAAATCAGATTACAACTCGGTTGACTAGGGACGAGCAGAAGCTTGTTAAT ATTACCAAGGAGTTGAAACCAAGGACTTACAGAATCAAGGTAGGTCACTCAGTTCACATGGGTGGGCTTATGAGGGTAGACATTGAAGAATTATCAGTCG ACTCCGTATATGTAACGGTGTGGGCATCACCGTATCTTCCACTGCACATGGGGAAAACTGAAAACATGGGCAATATGCTTGAAGAACATTTTGGCCGTCA GTTACAGCCTCCAATTGGGGAAAATCGAGTTGAAGAACTCGGAAAATGGGTGAGACACGAGTTCCATGTATCTGGGAATAGTTGGGCTTCAAGTTGTGTA GATATTGCTGCTGGAGGCCTGGGTTGGTTTGGCATCGGACTTAAAGGAGATGCAGTTGTAGGTGTTTGGACATATGAGGGAGTTGATGTGGTTCTTAGGA ACTCTTTGATTCCTTATAGGGCAGAAATATTTGAAGTTGCAGGCTTTACAGTCTCAAAAATTGTGTCAAAAGCTGACCAAACTTTAAACAGACCAAAAAG TAAAAGTGAAAAGAAGAATAAGATGCAAAGCCAAGGGATACAAGTTGTAGCTGGTGATGCAGTTTGA
AA sequence Show only first row Show all	>Lus10035986 pacid=23141062 polypeptide=Lus10035986 locus=Lus10035986.g ID=Lus10035986.BGIv1.0 annot-version=v1.0 MVISRSLSVAKSKLKPLFSLSRFSQALQNSPSIPPTPSSPTSSSPFTPSYFSTAPAKPKQPSSSSSSSLFLSRDGNVDGSTPSVHFCPGCGIHMQDSDPK YPGFFVKPSAKDPNCYKPSGRFVPIPLESQVSSSLKSGSVIESERDCSAASAFDKLLERPVVCARCHSLRHYGKVKDPSLENLLPEFDFYHTVGKRLVSS TGARTVVLLVVDASDFDGSFPKRLAKLVTEAIDENYTNWKEGKSGNVPRIVLVVTKIDLLPTSLSPTRFEHWVRQRARDGGADVIKKVHFVSPVKNWGLK DLVEDVKELAGARGHVWAVGMQNAGKSTLLNAMAKCTAGGGGVQPKITHLTEAPVPGTTLGIVRVDGLLPGNTKVFDTPGLLNPNQITTRLTRDEQKLVN ITKELKPRTYRIKVGHSVHMGGLMRVDIEELSVDSVYVTVWASPYLPLHMGKTENMGNMLEEHFGRQLQPPIGENRVEELGKWVRHEFHVSGNSWASSCV DIAAGGLGWFGIGLKGDAVVGVWTYEGVDVVLRNSLIPYRAEIFEVAGFTVSKIVSKADQTLNRPKSKSEKKNKMQSQGIQVVAGDAV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10620			P-loop containing nucleoside t...		Lus10035986 [exp]	0	1
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10036713 [exp]	3.2	0.7975
AT1G09190			Tetratricopeptide repeat (TPR)...		Lus10029853 [exp]	3.7	0.8198
AT4G18520			Pentatricopeptide repeat (PPR)...		Lus10029482 [exp]	5.2	0.8227
AT1G80480		PTAC17	plastid transcriptionally acti...		Lus10025665 [exp]	5.7	0.8115
AT3G24000			Tetratricopeptide repeat (TPR)...		Lus10038741 [exp]	11.3	0.7882
AT5G62440			Protein of unknown function (D...		Lus10023594 [exp]	12.5	0.7937
AT3G09060			Pentatricopeptide repeat (PPR)...		Lus10030513 [exp]	13.1	0.7855
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Lus10031368 [exp]	15.0	0.7075
AT5G22100			RNA cyclase family protein (.1...		Lus10004092 [exp]	16.6	0.8015
AT1G15510		VAC1, ATECB2	VANILLA CREAM 1, ARABIDOPSIS E...		Lus10025009 [exp]	16.9	0.7936

Compare expression of checked genes

Lus10035986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.