Plant FIBer expression Database

Lus10035987 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G17550 323 / 8e-99 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016693
[exp]
1310 / 0 AT2G17550 357 / 1e-111 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G101700
[exp]
349 / 2e-107 AT2G17550 525 / 2e-174 unknown protein
PFAM info
Representative CDS sequence
>Lus10035987 pacid=23141155 polypeptide=Lus10035987 locus=Lus10035987.g ID=Lus10035987.BGIv1.0 annot-version=v1.0
ATGGCTAGGAAATTGCGAGGAGTGGAGGGTCCTAGAAATAGCTTGGATGTGCAAGTAGAAAATCGTCGATTCCGTGGGCTGCGTGTATTGGGTCATCAGC
AAGTTGAACAGGAGTGGACAGATGGAAGCTGTGATCCAACGAAAAGGTTAGTTAATGGAGGGAACATGTATACTAGTAGAATCATCAAGGAGGGTGGTGC
GCCTACACCTAGCATTGTCGCGCGTTTGATGGGTGTGGACGCTTTACCACCACTGCTTCACCCAACCAGCTGGTCACTTAAACAGGAAAAGAATCATGAT
CTCACCTCATCTAGGAAGGACCAACTTGACCATTTCTACCCCAGAACCGAGCATGAGGAGGATTCATCAGATCAATTATGGTGTAACATTCAAACAATCC
GTAGACAACACCCTCAAGAGGAACAACTTGAGAAGTTCAAAAGGGAATTTGAAGCCTGGCAAGCTTCCAGGTTCAAGCAATGTTCCAGTGTTGCCCAAAT
TGTTGTCAACATTGCTGGCCAGTTGGAACACAAGGAGGAATGTACTGTTTCTTCAACGGCTTCCAACTTTGGAAAACGCTTCATTGATGGTGGTTGTGCT
CCTAACAAAATAGTTGTTTTGAAGCCTGGCCCTGATGAGTATCAAGATTCTTTGGCTAGTACTAGTTCCCCAGCCATTGCTACTTCCGAGGATAGAGGCA
CCAGCATTCAGAACTTCCTCGAGGAGGTTAAACAACGGCTCAATACTGAAATTGAAGGGACAAATTTTCAGAGAGATCAAATGTTGTCAGACTACCCCAA
CAAGCCAAGTGTCTCCAGCTGGGACACTACCGCTAATTTGGTCCGTTCAGAATCCACAAGATCATCCAGACGTGATCAAATGCAGTACAATGGCACTGAA
TTCATGAACCGGAATGCAAGGCGATTCTTGTCGGAGAGACTGAGGAATATTATTGTAAAGAAGAGAACGTCATCCCTGGATGTTCGTAGCAGTTCTGGAT
CGGATGATATTACAAAGGAAGAAATGCAAACAAGATCGTTCAGGCATGAAGAAGAAGAAGCGGGTTATGTAGGAGGCATCATGTCGTACAAAGAGCCGTC
TCCTAGGAACTTAATGAGATCATTTTCAGCTCCTGTATCATTCGGAAAGCTTCTTTTAGAGGATCGTCACATCTTAACAGGAGCACACATCAGAAGGAAG
CATGAAGAAGCACTTGATACTGCTAGTGAAGATCAATTGAAAAACGGCAAGAGAGAAAGGTTTAATATCAAACAGAAAGTTTCCAGTTTCAGACACAATT
TAAGTCTCAGGGGGAAGAAGATGTTTCGCAAAAGGTTTCAGAGGGTGGAATCTTGCAATTATGGCAAGGATATTCACATTGTCAACAACACTACTAGACA
CATGCCCACAGTTGTAAACAATGGGGAGAGACACAAAACCATAATGGAGAACTTGACTGAGGTGCCTCCAAGCCCAGCATCCATTTGCAGCAGTGCTCAA
GAAGACTTGTGGAGGCCTTCAGATTATTATGTGAGCCCAGTTTCAACTCCTGATGTTACCATGGAAGATGAAAGTGGCATGCCTCAAGTATTTAGGGATA
TATGCTCCAATCTCAAAGAGCTGAGGAGGCAAATAAATCGATTGGGATCAACTGACGACGACGAGGAAACTGGTGCTGCATCGTCAGTAGACTGTGGAGT
AGAACACAGGGAGGAGGAGAATGTGAGATTGGAACCACCAGGGAGACGGATAGAAGAAAAAGCAGAAGCTTGTTACATCAGAGAATTGCTGATTGCTTCT
GGGTTATTCGATGGGTCGTCATCATCCACAGACGTGTGTGCACCCAGCAGCAGATGGGATCCGCTTGGAAAGCCAATTCCAAACTGGGTGTTTGAACAAG
TGGAAGAAGCATCACGTAAGAAAGGGGACGAGGAGGGGAAAGATAATGTCGAGACGAGAAGCGATATGGATAGGAAGATGTTGTATGACTTGTTGAATGA
GGCATTGACGACTGTAATCCCAGGTGGGCGGAGTACTAGTACTCGTACTAGTCTAAGGGGAACCAAGTTGTTGGAGAGGGTGTGGAAGATGGTCCAGGAG
TATGTATGTGATGTTATTCCTTATGGAAGAAGTGATGTTAGTGTAGTGGAGAGACAAATGGGTTCAATCACCTCATGGTCATGTGGTGGGTTGAACTATG
AGGATCAAGGTTTGGATGAATTGGCTACAGAAATGCAGTTTCTCATAGTTGAAGACATCATCCAGGACACTCTCCAGGAACTGATATAA
AA sequence
>Lus10035987 pacid=23141155 polypeptide=Lus10035987 locus=Lus10035987.g ID=Lus10035987.BGIv1.0 annot-version=v1.0
MARKLRGVEGPRNSLDVQVENRRFRGLRVLGHQQVEQEWTDGSCDPTKRLVNGGNMYTSRIIKEGGAPTPSIVARLMGVDALPPLLHPTSWSLKQEKNHD
LTSSRKDQLDHFYPRTEHEEDSSDQLWCNIQTIRRQHPQEEQLEKFKREFEAWQASRFKQCSSVAQIVVNIAGQLEHKEECTVSSTASNFGKRFIDGGCA
PNKIVVLKPGPDEYQDSLASTSSPAIATSEDRGTSIQNFLEEVKQRLNTEIEGTNFQRDQMLSDYPNKPSVSSWDTTANLVRSESTRSSRRDQMQYNGTE
FMNRNARRFLSERLRNIIVKKRTSSLDVRSSSGSDDITKEEMQTRSFRHEEEEAGYVGGIMSYKEPSPRNLMRSFSAPVSFGKLLLEDRHILTGAHIRRK
HEEALDTASEDQLKNGKRERFNIKQKVSSFRHNLSLRGKKMFRKRFQRVESCNYGKDIHIVNNTTRHMPTVVNNGERHKTIMENLTEVPPSPASICSSAQ
EDLWRPSDYYVSPVSTPDVTMEDESGMPQVFRDICSNLKELRRQINRLGSTDDDEETGAASSVDCGVEHREEENVRLEPPGRRIEEKAEACYIRELLIAS
GLFDGSSSSTDVCAPSSRWDPLGKPIPNWVFEQVEEASRKKGDEEGKDNVETRSDMDRKMLYDLLNEALTTVIPGGRSTSTRTSLRGTKLLERVWKMVQE
YVCDVIPYGRSDVSVVERQMGSITSWSCGGLNYEDQGLDELATEMQFLIVEDIIQDTLQELI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G17550 unknown protein Lus10035987
[exp]
0 1
AT3G50120 Plant protein of unknown funct... Lus10011501
[exp]
4.5 0.8421
AT2G20180 bHLH PIF1, PIL5, bHL... PHY-INTERACTING FACTOR 1, phyt... Lus10011899
[exp]
5.2 0.8406
AT5G14430 S-adenosyl-L-methionine-depend... Lus10022291
[exp]
5.9 0.8254
AT1G52190 Major facilitator superfamily ... Lus10025802
[exp]
6.2 0.8487
AT1G52190 Major facilitator superfamily ... Lus10035860
[exp]
6.3 0.8397
AT2G20180 bHLH PIF1, PIL5, bHL... PHY-INTERACTING FACTOR 1, phyt... Lus10022833
[exp]
8.1 0.8370
AT1G61350 ARM repeat superfamily protein... Lus10002598
[exp]
9.4 0.8193
AT2G19770 PRF5 profilin 5 (.1) Lus10037591
[exp]
11.7 0.8286
AT4G08150 HD BP1, KNAT1 BREVIPEDICELLUS 1, BREVIPEDICE... Lus10028244
[exp]
16.9 0.8071
AT1G55190 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, ... Lus10015631
[exp]
18.9 0.7899

Lus10035987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.