Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35510 92 / 2e-21 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016694 [exp] 399 / 6e-141 AT4G35510 108 / 2e-27 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G063000 [exp] 189 / 2e-57 AT4G35510 66 / 7e-12 unknown protein Potri.005G102000 [exp] 161 / 1e-46 AT4G35510 58 / 3e-09 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035988 pacid=23141050 polypeptide=Lus10035988 locus=Lus10035988.g ID=Lus10035988.BGIv1.0 annot-version=v1.0 ATGGATGCTAACATTTGCGATATCAATCACTTGGATGCGGATGTCCTTTTGCCCCCAAGAAAACGTCTGCTTGCTGGATTCAAGAAACAGACTTTCGATG CTGGTGGTAGTGCTGGTGGTGTTTCCTCTAATTACCCACTTGCACTAGCTTCTTCTTCATCTTCTGCCGCATCACTTTATCCCCACTCGCCGTCATCTCC ATCCCCTCCTCCTTCACCCCCTTCAACCCAGTTCCAGTGCCGGCTTGGTGACCTCGTGAGTGGTCATTTCAACCGTCAACGTAATCTTTCCCCCGAGCAG ATTTTGGATGCCTCGAGATCGGCAGCCGATACTGCTCTAAAGGCCGCAGAGGCAGCTCGAGCTGCGGCCCAGGACAAGGCTGCTAACGCGGCAAAGGCTG TACTTGCCGCAAAAGAAGCATTAGCCCTGGTTGCGTCTTTCTCGGAGGAGGCAGTTACTGAGGAAAGAGTCATGGATGTGGAGAGGCACATAAGGAAGAA TAAGCTGAAGAAGCATGTTCAGGTTCAGCTCTTGTACGAGAAACACCAACCTGTTGACTATCATGGCAAGAGGAATGATGAAGAACTGGCACGCAGGTTG CATCGAGTTATGAACAGCTCCCCTCGCATTTCAAAGAACTCTCCCGAGGGTAAGGGACACAAGAATAAGAAGCTTAAGGGATCACCGGCAAAGGCTTCCA ATGGCAGTATAGTAGTCTTTGGTGAATCCCTGTGTGATGGCGGGCATGAAGTAGCTGGTAAATTGGAATCTGAGGAAGACAACTCGACGGGTGAGGCCAG CATAGATGACGAGAGGATATCGAGAAATGGGAGTGGGAAGAGGACCCAAGTTGAGGTGGAGAACGAAGGTGATGCGGAGTCTTAA
AA sequence Show only first row Show all	>Lus10035988 pacid=23141050 polypeptide=Lus10035988 locus=Lus10035988.g ID=Lus10035988.BGIv1.0 annot-version=v1.0 MDANICDINHLDADVLLPPRKRLLAGFKKQTFDAGGSAGGVSSNYPLALASSSSSAASLYPHSPSSPSPPPSPPSTQFQCRLGDLVSGHFNRQRNLSPEQ ILDASRSAADTALKAAEAARAAAQDKAANAAKAVLAAKEALALVASFSEEAVTEERVMDVERHIRKNKLKKHVQVQLLYEKHQPVDYHGKRNDEELARRL HRVMNSSPRISKNSPEGKGHKNKKLKGSPAKASNGSIVVFGESLCDGGHEVAGKLESEEDNSTGEASIDDERISRNGSGKRTQVEVENEGDAES

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35510			unknown protein		Lus10035988 [exp]	0	1
AT5G52810			NAD(P)-binding Rossmann-fold s...		Lus10027529 [exp]	4.0	0.8478
AT5G01090			Concanavalin A-like lectin fam...		Lus10021117 [exp]	7.5	0.8393
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10037071 [exp]	8.7	0.8377
AT1G14450			NADH dehydrogenase (ubiquinone...		Lus10038124 [exp]	10.6	0.8055
AT5G04990		ATSUN1	ARABIDOPSIS SAD1/UNC-84 DOMAIN...		Lus10008933 [exp]	17.9	0.8227
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Lus10008623 [exp]	18.8	0.8146
AT3G21350		MED6	RNA polymerase transcriptional...		Lus10022814 [exp]	20.0	0.8433
AT1G61730	GeBP		DNA-binding storekeeper protei...		Lus10010076 [exp]	20.2	0.8220
AT3G19120			PIF / Ping-Pong family of plan...		Lus10025271 [exp]	20.9	0.8051
AT5G02850			hydroxyproline-rich glycoprote...		Lus10002749 [exp]	23.5	0.7973

Compare expression of checked genes

Lus10035988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.