Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35560 913 / 0 DAW1 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G05570 199 / 8e-52 transducin family protein / WD-40 repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037841 [exp] 209 / 4e-55 AT5G05570 1009 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10030399 [exp] 191 / 2e-49 AT5G05570 977 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10009082 [exp] 59 / 2e-08 AT5G05570 358 / 6e-106 transducin family protein / WD-40 repeat family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G101600 [exp] 1140 / 0 AT4G35560 1037 / 0.0 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.016G117800 [exp] 236 / 1e-63 AT5G05570 900 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G187700 [exp] 197 / 3e-51 AT5G05570 1069 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G069750 [exp] 172 / 4e-47 AT5G05570 377 / 4e-122 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G069700 [exp] 45 / 0.0004 AT5G05570 624 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF08596 [flax] [poplar] Lgl_C Lethal giant larvae(Lgl) like, C-terminal CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10035989 pacid=23140975 polypeptide=Lus10035989 locus=Lus10035989.g ID=Lus10035989.BGIv1.0 annot-version=v1.0 ATGTTTGTGAAGAAGCTGGTGGAGAAGGCTTCTATTGCTTCAAAGAAGCCTTCAGGAGGTAATGGGAGGGGTTTAAATTCCAATGATATAGAGCCACGCC TGTCATTCCATTATGGCATCCCATCTGGAGCTACTATCTTGGCTTCTCATGATCATCCCTCCTCCTCCTTCTGTCTTGCTGTTTCCACCAGATATGGAAG GATTAAATTATTTGGCATAGATAATACTCAAGCCCTGCTTCATTCACCTGATGCCGTCCCCACCAAGTTTTTGAAGCCTTCAGGAGGCAATGGGAAGGGT TTAAATTCCAATGATATAGAGCCACGCCTGTCATTCCATTATGGCATCCCATCTGGAGCTACTATCTTGGCTTCTCATGATCATCCCTCCTCCTCCTTCT GTCTTGCTGTTTCCACCAGATATGGAAGGATTAAATTATTTGGCAAAGATAATACTCAAGCCCAGCTTCATTCACCTGATGCTGTCCCCACCAAGTTTTT GAAGTTCTCTCAAAACGGAGGCACCCTTATCCTTTTTCATGTAAATTCAAGAAACCATATTGAGGTTTGGGATGTGGAGAAAAGGCTTTTGTCCCATATC CATGTCTTCAGAGGAGATATTACCTCTTTTACACTTCTCCGGCATACTCCCTTCATGTACGTTGGGGACTCCAGGGGTAACATTACTGTTTTGAAGCTTG AAAGTGAATCATTTCACATCTCACGCATGAAATATACATTACCTCTCTCTGCTGCTTCTCAAGGAAATCCAACTCAGATGGTTGCTGGTACTGATGCTGA TGCTGTAGTGAGTATACTGCCTGTACCAATTGCAGAAACAAAGAGGCTTCTCATTGTGTACCGAGATGGTTCAATAATACTGTGGGATATTAGAGAAAGC CGATCCATCTTCACAACAGGTTCAAGTTGGATGCGGTCACAGAATCAAGAAGTAAAGAAAGTAACTTGTGCATGTTGGGCATGCCCCCATGGGAGTAAAG TCGCTGTGGGATACAGCAACGGGGAAATCTTCATATGGACCATTCCTGTTTCCAGCACGCATTATGAAACACCTGTTTCACAGAATGTTCCTTCCTCAAA ACTGAATCTTGGGTATAAATTGGATAAAGTTGCCATAGCATCTCTGAAGTGGATCCACGCAGATGGGAAAGCAAGTCGCCTATACGTCATGGGTGCCGCC TCTGATGTTTCCACATCTAGCAACTCATTGCAGGTGGTCTTACTCAATGAACATTCAGAAACACGTACAATCAAGTTAGTCCTCCATTTGCCCGAGGCCT GCATTGATATGGATATTGTTTCCAGCTCTTTTGAGAAAGGAAGCATCAAGCAAGTCTCATTTTTACTGCTTGGGAGATCAGGACACATGTATGCATATGA TGACGGCTTGATCGAGAAGTATCTGCTTCAATCCCAAGCAAAGGGTTCACCTTCATTTCCAAGAGAAGTCATGGCGAAGATGCCATATGTTGATTCTATC ATTTCTGCAGCTAAATTCATCACAAAACCCCCGTGTCTGTTGAATTATCCCGATGAGGATTACACGGCGTTAGCCAGAAATGTTCCATCCGTACTACCCT TTGAGGGAAAACAAAAGGAGAATCCAGGACATAAGTTTAGTGGATTTGCAAAGATAAAAAACGTGTATATAACTGGACACAAAGACGGTGGCATAAACTT CTGGGATGTTTCTTGTCCCCTTCCTGTTCCTATTCTGTCACTGAAGCAACAGAGTGAAGATGATTTCTCTTTAAGTGGAGTACCGGTGACAGCACTTTTC TTTGATGTCGAGTCTCGCCTTCTTATATCGGGGGATCAGAATGGAACCGTTCGTATTTTTAAGTTTAATCCGGAACCGTATGCCTCAGAGAACGGTTTTA TGTCCTTCCAAGGAAGCTCTAGAAAGGGAAATAACCACGTTGTCCAGAGTCTTAAACTCTTCAAGATTACAGGCGGTGTACTGTGCATAAGCCCAAGTCA TGACTCAGGACGTGTAGCAGTTGGGTCTGATCAAGGATACGTATCGGTGATTGACCTAGAACGGCCAACTCTACTTTATCAGCAACTCATTATCAGTGAG CTCTCCACTGGTATCATTTCTCTGAAATTTGAAACGTGCAATTTGCATGGCTTTGAAAAGAATACCCTAGTCGTTGCTACAAGAGAGTCTTCGGTTTTAG CTCTTGATTGCGATACCGGGAACATGTTAAGCACCGAGACCGTGCATCCAAAGAAACCATCTAGAGCTCTATACATGGAGATCTTGGATGGCCAGAGTGT TCAAGATGTTAACAATCAAGAAACAAGTGTTAAAGATGCATCAAAGCAGCCTTCTGTACTTATATGTTCAGAGAAAGCTGTGTATGTGTATTCCTTGAAT CATGTTGCTCAGGGAGTGAAAAAGGTTCATTACAAGAAAAAGTTCAATTCGGCTTCTTGTCTGTGGGCTTCAACATTTTCAGATGCTTCTGGTGTTGTTG GCCTTGTACTGCTTTTATCTTCTGGAAAATTAGAAATAAGGTCATTGCCAGAGTTATCATTATTAAGGGAGTCGTCAATCGGGGATTTTGAATATTCTGC AACTGAGACTTCAATCTGCTGTTCACAGGATGGAGAACTTTTCCTGGCCAATGGTGATCAGGAAATGTTTGTCACGTCGGTTTTTCTCCTGAAAGACAAC TTCAGGCTTGTAGACTCTTTCAGCAAAGTTTACAAATATGACCCCATTTCATCATCACAACAAGGTCCTGCTGCTATCGCACAAAAGGAAAAGAAGAAGG GTATCTTCAGCTCCCTGGGTAAAAGTAAATCGAAGCAGGCTCCTGATCAGATAGAAACAGAAGACAGTAAAGAAAGTGTTGAAGAGTTGGGACTGATATT CTCAACTGCAAATTTTGGATGTGATGATGAAGGAACTACGATTGACAACAACAGCAGCATGGGCGTGCATGCTGCTGATCCGGACGAATTAGATATAGAT GACATTGATATCGAGGATCCAGTAGAGAAACCGAAGGACCAGAATATCTTGGCATCTCTTAATAAGCAGAAGCTTGTAATGGCTAGCAAGCTGCAGGCAA TTAAAGGTAAAGTAGTGAAAGAGATAAACAAAAAGACTCATGGTAGTGTGAATAAACAACAGGAGGAGGAGGAGGAAGATGGGGGAGTTGATCAAATTAA GAAGAAATATGGCTTCTCTTCAACTAGCGAGACCGGCGGTGCTGCGAGAATTGCAGAAAGCAAGCTTCAAGACAACGTCAACAAGTTGCAGGGTATAAAT GTGAGAGCCGCGGCGATGCAAGATACAGCGAGGTCATTCTCTTCCATGGCAAAGGAGGTCCTGAGATTGTCCGAAAAGAACGGGAAGAAGAACTCTTAG
AA sequence Show only first row Show all	>Lus10035989 pacid=23140975 polypeptide=Lus10035989 locus=Lus10035989.g ID=Lus10035989.BGIv1.0 annot-version=v1.0 MFVKKLVEKASIASKKPSGGNGRGLNSNDIEPRLSFHYGIPSGATILASHDHPSSSFCLAVSTRYGRIKLFGIDNTQALLHSPDAVPTKFLKPSGGNGKG LNSNDIEPRLSFHYGIPSGATILASHDHPSSSFCLAVSTRYGRIKLFGKDNTQAQLHSPDAVPTKFLKFSQNGGTLILFHVNSRNHIEVWDVEKRLLSHI HVFRGDITSFTLLRHTPFMYVGDSRGNITVLKLESESFHISRMKYTLPLSAASQGNPTQMVAGTDADAVVSILPVPIAETKRLLIVYRDGSIILWDIRES RSIFTTGSSWMRSQNQEVKKVTCACWACPHGSKVAVGYSNGEIFIWTIPVSSTHYETPVSQNVPSSKLNLGYKLDKVAIASLKWIHADGKASRLYVMGAA SDVSTSSNSLQVVLLNEHSETRTIKLVLHLPEACIDMDIVSSSFEKGSIKQVSFLLLGRSGHMYAYDDGLIEKYLLQSQAKGSPSFPREVMAKMPYVDSI ISAAKFITKPPCLLNYPDEDYTALARNVPSVLPFEGKQKENPGHKFSGFAKIKNVYITGHKDGGINFWDVSCPLPVPILSLKQQSEDDFSLSGVPVTALF FDVESRLLISGDQNGTVRIFKFNPEPYASENGFMSFQGSSRKGNNHVVQSLKLFKITGGVLCISPSHDSGRVAVGSDQGYVSVIDLERPTLLYQQLIISE LSTGIISLKFETCNLHGFEKNTLVVATRESSVLALDCDTGNMLSTETVHPKKPSRALYMEILDGQSVQDVNNQETSVKDASKQPSVLICSEKAVYVYSLN HVAQGVKKVHYKKKFNSASCLWASTFSDASGVVGLVLLLSSGKLEIRSLPELSLLRESSIGDFEYSATETSICCSQDGELFLANGDQEMFVTSVFLLKDN FRLVDSFSKVYKYDPISSSQQGPAAIAQKEKKKGIFSSLGKSKSKQAPDQIETEDSKESVEELGLIFSTANFGCDDEGTTIDNNSSMGVHAADPDELDID DIDIEDPVEKPKDQNILASLNKQKLVMASKLQAIKGKVVKEINKKTHGSVNKQQEEEEEDGGVDQIKKKYGFSSTSETGGAARIAESKLQDNVNKLQGIN VRAAAMQDTARSFSSMAKEVLRLSEKNGKKNS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35560		DAW1	DUO1-activated WD40 1, Transdu...		Lus10035989 [exp]	0	1
AT3G43210		TES, ATNACK2	TETRASPORE, ARABIDOPSIS NPK1-A...		Lus10005181 [exp]	3.7	0.8092
AT2G28150			Domain of unknown function (DU...		Lus10016150 [exp]	8.5	0.7790
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Lus10004715 [exp]	9.6	0.8238
AT5G04895			DEA(D/H)-box RNA helicase fami...		Lus10034126 [exp]	23.2	0.7788
AT3G27390			unknown protein		Lus10022317 [exp]	30.0	0.7689
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022879 [exp]	41.4	0.7839
AT2G26550		HO2	heme oxygenase 2 (.1.2.3)		Lus10021748 [exp]	43.4	0.7443
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026787 [exp]	44.5	0.7655
AT3G53320			unknown protein		Lus10026478 [exp]	44.9	0.7491
AT1G74350			Intron maturase, type II famil...		Lus10021359 [exp]	57.5	0.7680

Compare expression of checked genes

Lus10035989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.