Plant FIBer expression Database

Lus10035990 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66005 234 / 9e-79 Expressed protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G101501
[exp]
260 / 8e-89 AT5G66005 268 / 3e-92 Expressed protein (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF03266 NTPase_1 NTPase
Representative CDS sequence
>Lus10035990 pacid=23141215 polypeptide=Lus10035990 locus=Lus10035990.g ID=Lus10035990.BGIv1.0 annot-version=v1.0
ATGGCAGCGTCGGCGGCAGCAGCAGCGGGTAGTGGTGGGAAACGCCTGTTTCTGGTCACTGGCCCCCCTGGAGTTGGGAAAACCACATTGATCATCAAAG
TGATGGAGAGACTCAAGGCATCAAACCCTAACTTGAAGGTTCAAGGATTCTACACACGTGAGGTTAGAGGAGTAGGAAATCAAAGGGTTGGGTTTGAAGT
TGTTACATTGGATGGTCGCAAAGCCCCACTCTCTTCCTCCATTTCCACCAAGCCAGAGTGGAGTAGATGGCCAAGTGTGGGGAAGTACAAAGTGGACGTG
CAATCCTTTGATTCTCTGGCACTGCCTGAGTTGCAGGTCAGGGAAGACACCCGACTGTTCATCATAGACGAGGTTGGCAAAATGGAATTGTTAAGTCCAT
CTTTCTTCCCAGCTGTTTTGAGGATTCTGGAATCAAGCATCCTAGTTTTGGCTTCGATTCCTCTCCCCAAATCCGGCCCTAATATTGCCGCAGTTGCGAG
GTTAAGGAGTCAACCCGGTGCTACCATTTTCACATTAAACCAGAGGAACAGGGATGCTCTGAAAGATGACATCTATATTGAAATGTTACAAGCATTAGCT
CCTGCTGCTAGGTAA
AA sequence
>Lus10035990 pacid=23141215 polypeptide=Lus10035990 locus=Lus10035990.g ID=Lus10035990.BGIv1.0 annot-version=v1.0
MAASAAAAAGSGGKRLFLVTGPPGVGKTTLIIKVMERLKASNPNLKVQGFYTREVRGVGNQRVGFEVVTLDGRKAPLSSSISTKPEWSRWPSVGKYKVDV
QSFDSLALPELQVREDTRLFIIDEVGKMELLSPSFFPAVLRILESSILVLASIPLPKSGPNIAAVARLRSQPGATIFTLNQRNRDALKDDIYIEMLQALA
PAAR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G66005 Expressed protein (.1.2.3) Lus10035990
[exp]
0 1
AT3G18830 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MO... Lus10023640
[exp]
4.5 0.7774
AT2G26680 unknown protein Lus10030089
[exp]
5.8 0.7529
AT1G53120 RNA-binding S4 domain-containi... Lus10041931
[exp]
6.2 0.7929
AT3G01910 AT-SO, ATSO, SO... sulfite oxidase (.1.2.3) Lus10012532
[exp]
8.9 0.7797
AT2G41530 ATSFGH ARABIDOPSIS THALIANA S-FORMYLG... Lus10031051
[exp]
10.8 0.7950
AT3G54900 ATGRXCP, CXIP1 GLUTAREDOXIN, CAX interacting ... Lus10041501
[exp]
15.3 0.7586
AT4G35780 STY17 serine/threonine/tyrosine kina... Lus10025010
[exp]
21.2 0.7359
AT2G27970 CKS2 CDK-subunit 2 (.1) Lus10041349
[exp]
25.5 0.7659
AT1G78590 NADK3, ATNADK-3 ARABIDOPSIS THALIANA NADH KINA... Lus10035645
[exp]
25.8 0.7325
AT3G48425 DNAse I-like superfamily prote... Lus10043333
[exp]
27.9 0.7500

Lus10035990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.