Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16444 57 / 7e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016696 [exp] 137 / 1e-41 AT4G16444 187 / 5e-61 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G101300 [exp] 73 / 1e-16 AT4G16444 181 / 9e-59 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04420 [flax] [poplar] CHD5 CHD5-like protein
Representative CDS sequence Show only first row Show all	>Lus10035992 pacid=23141206 polypeptide=Lus10035992 locus=Lus10035992.g ID=Lus10035992.BGIv1.0 annot-version=v1.0 ATGGAAGTCGACGAGGATCCTGTACAACAACGGAGGTCTTTCGTGGCTCCTCTCATATTCTCGGTCGTTGTACTGTTCCAGTTGGCATCGAGACGGTTCG AGATCCTGAAGAGGAAAGCCTCTAAGAGCGAGAAGGAAATGCAGCTGCGTGCAGAAATAAAGCAACTCTACAAAGAGGCCAGCAGCTTCTCACAGCCCTC GACGTTTGCTCAAGCAGCAAAACTCAGAAGGTCTGCAGCTGCTAAAGAGAAGGAACTTGCAAATTGGCAAACTATGCTGGTGAATGTGATGCAAGAGTTC ACAAACCAATCATTGCGGGAAGTAGTCTGCTATTATGTGTCGGCGAAGGGTTTTTTCTCCGAGCTACCGTATGTGAATCTGTCTGTCATTCAGGTTGGCC TTAAGCCGCCGGATCCTTTAGAGGCTCGGTGA
AA sequence Show only first row Show all	>Lus10035992 pacid=23141206 polypeptide=Lus10035992 locus=Lus10035992.g ID=Lus10035992.BGIv1.0 annot-version=v1.0 MEVDEDPVQQRRSFVAPLIFSVVVLFQLASRRFEILKRKASKSEKEMQLRAEIKQLYKEASSFSQPSTFAQAAKLRRSAAAKEKELANWQTMLVNVMQEF TNQSLREVVCYYVSAKGFFSELPYVNLSVIQVGLKPPDPLEAR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G16444			unknown protein		Lus10035992 [exp]	0	1
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Lus10035965 [exp]	6.7	0.7934
AT1G63300			Myosin heavy chain-related pro...		Lus10027462 [exp]	7.5	0.7838
AT5G52280			Myosin heavy chain-related pro...		Lus10039218 [exp]	10.5	0.8143
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Lus10038764 [exp]	11.0	0.7370
AT3G27030			unknown protein		Lus10035199 [exp]	11.4	0.8258
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10001184 [exp]	13.2	0.7785
AT2G17550			unknown protein		Lus10035987 [exp]	19.0	0.7663
AT3G26700			Protein kinase superfamily pro...		Lus10012585 [exp]	19.6	0.7273
AT2G45670			calcineurin B subunit-related ...		Lus10015853 [exp]	29.7	0.7299
AT1G05170			Galactosyltransferase family p...		Lus10027185 [exp]	38.1	0.7457

Compare expression of checked genes

Lus10035992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.