Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51460 909 / 0 rhd4 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) AT5G66020 906 / 0 IBS2, ATSAC1B, ATSAC6, SACIB IMPAIRED IN BABA-INDUCED STERILITY 2, SAC DOMAIN-CONTAINING PROTEIN 6, SUPPRESSOR OF ACTIN 1B, Phosphoinositide phosphatase family protein (.1) AT3G51830 544 / 0 ATG5, SAC8 SAC domain-containing protein 8 (.1.2) AT3G14205 157 / 2e-40 Phosphoinositide phosphatase family protein (.1) AT1G17340 154 / 1e-39 Phosphoinositide phosphatase family protein (.1) AT1G22620 149 / 9e-38 ATSAC1 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) AT5G20840 144 / 6e-36 Phosphoinositide phosphatase family protein (.1) AT3G43220 115 / 8e-27 Phosphoinositide phosphatase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016697 [exp] 1178 / 0 AT3G51460 947 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10009080 [exp] 473 / 2e-161 AT3G51830 800 / 0.0 SAC domain-containing protein 8 (.1.2) Lus10025267 [exp] 431 / 2e-144 AT3G51830 731 / 0.0 SAC domain-containing protein 8 (.1.2) Lus10027650 [exp] 155 / 1e-39 AT3G43220 936 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10039913 [exp] 135 / 3e-33 AT3G43220 842 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10037446 [exp] 134 / 9e-33 AT3G14205 947 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10013184 [exp] 133 / 2e-32 AT3G14205 923 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10014827 [exp] 114 / 3e-26 AT1G22620 1389 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Lus10016941 [exp] 44 / 0.0002 AT1G22620 364 / 3e-119 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G100500 [exp] 996 / 0 AT3G51460 976 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Potri.016G118300 [exp] 533 / 0 AT3G51830 882 / 0.0 SAC domain-containing protein 8 (.1.2) Potri.001G163900 [exp] 158 / 8e-41 AT3G14205 987 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.018G063700 [exp] 157 / 3e-40 AT3G43220 1043 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.003G071300 [exp] 153 / 4e-39 AT3G14205 1011 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.006G136400 [exp] 148 / 2e-37 AT3G43220 1018 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.019G080300 [exp] 111 / 3e-25 AT1G22620 1397 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.013G107950 [exp] 110 / 4e-25 AT1G22620 1355 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF02383 [flax] [poplar] Syja_N SacI homology domain
Representative CDS sequence Show only first row Show all	>Lus10035993 pacid=23141269 polypeptide=Lus10035993 locus=Lus10035993.g ID=Lus10035993.BGIv1.0 annot-version=v1.0 ATGATGGAGAGGGCAGAGTCAGGGCAGAAGCTATACTCGCGTCTTCGACTCTGGGAATTCCCTGATCAGTATGTCATTGAACCAACTGATGGCTCTTCCG GTGCTCCCCTCGCTGTTAGTCGCAAAGATGGATCAATGTCTCTCATCGACCAAGTCCCACATTGCACCTCCGTTCGGGTTCCTAAAATCCAGACTATTTT TGGTGTCGTTGGCCTGCTCAAGCTCGTCGTAGGGTCTTACTTGATAGTAATCAATGACCGTGAGTGTGTTGGATCCTACATGGGGCATTACATCTACAAA GTTACATCATTGAAGGTTTTCCCTTGTGACCATTCTTTGAAAAGTACGACAGCTGAACAAAAAAAGGTAGAAGCTGAATTCTCTTCTCTGCTTAATGTTG CGGAGCGAACTCCTGGTCTCTATTTCTCATACGAGGCAAATTTAACATTAAGTGCTCAGCGATTGAATGATCTCGGAGATGAAACAAAATTGATGCCTCT GTGGAGACAGGCAGAGCCCAGGTTTCTATGGAACAATTATATGATGGAAGTCATCATTGATAACAAGCTTGACCAGTACCTTCTTCCTGTTATCCAAGGG AGCTTTCAGAATTTTCAAGCAGCCATCGGGAAGGACATAATTGAAGTTACTTTGATTGCAAGGAGATGCACTCGAATGTGGAGAAGGGGAGCTGACGGTG ATGGATATGTTGCTAATTTTGTGGAGTCTGAACAAATCGTGCAGATGAATGGATATACAGCATCATGCGTTCAGATTAGAGGCTCAATGCCCTTTCTCTG GGAGCAGATTGTTGACTTGACATACAAACCTAAGTATGACATTATCAAACCTGAGGAAGCACCTCGAGTTGCAGAACGTCATTTCCTGGATTTGAGAAAA AAGTATGGAAGTGTATTAGCTATCGATCTTGTGAACACTCATGGTGGTGAGGGACACCTGAGCGACAAGTTTTCAAGTGCACTTCAACCGGTTCTCAACG ACGATGTAAGATATGTGCACTTTGATTTCCATCAGATCTGTGGACATGTTCACTTTGAACGCCTTTCAATTCTCTATGAACAAATTGTGGATTTCCTGGA CAAGAGCGGGTACCTCTTGGTGGATGAGAAAGGTGAAAAATTGAAGGAACAGACTGGAATTGCTAGAACAAACTGTATCGATTGCTTAGACCGAACTAAT GTGACTCAGAGCATGATAGGTCGAAAGATGTTAGAACTCCAACTTCGAAGAATTGGTGTTTTTTCTGCTGAAGAAACGATCAGCTCACATCCAAATTTTG ATGATAGCTTCAAAATAATGTGGGCTAATCATGGAGATGATATAAGTATCCAGTACTCAGGCACTCCTGCTTTGAAAGGAGACTTTGTAAGGCTTGGACA GCGGACAACTCAAGGAATCATCAAAGACGGTATTAATGCCCTTGTCCGGTACTATTTGAATAATTTTGCGGATGGCAAGAAGCAGGATGCAATTGATCTG CTGCAAGGACACTACATTGTATCTGTAAGCCGGGATATGAAACCTCCATCTCAAGCTGCTGGAGGAATTGAGAGCGTCGCCTCTTTCCCTCTGGCTTTTG GATTGATAATGGTGGGGTTGTTCTTCGCATTGTTGTCACTTAGACAAGCTCCATACGATATGAAGCACTTATTCTTCTCATTACTGTGGGGAAGCTTTAC AGTTGGGATTGCAGCATTTGTGAGGGCTAACGGTCGTGTTTTCTGCAATAGGCCTCGTCTCCATAAGCCTAGATCATAG
AA sequence Show only first row Show all	>Lus10035993 pacid=23141269 polypeptide=Lus10035993 locus=Lus10035993.g ID=Lus10035993.BGIv1.0 annot-version=v1.0 MMERAESGQKLYSRLRLWEFPDQYVIEPTDGSSGAPLAVSRKDGSMSLIDQVPHCTSVRVPKIQTIFGVVGLLKLVVGSYLIVINDRECVGSYMGHYIYK VTSLKVFPCDHSLKSTTAEQKKVEAEFSSLLNVAERTPGLYFSYEANLTLSAQRLNDLGDETKLMPLWRQAEPRFLWNNYMMEVIIDNKLDQYLLPVIQG SFQNFQAAIGKDIIEVTLIARRCTRMWRRGADGDGYVANFVESEQIVQMNGYTASCVQIRGSMPFLWEQIVDLTYKPKYDIIKPEEAPRVAERHFLDLRK KYGSVLAIDLVNTHGGEGHLSDKFSSALQPVLNDDVRYVHFDFHQICGHVHFERLSILYEQIVDFLDKSGYLLVDEKGEKLKEQTGIARTNCIDCLDRTN VTQSMIGRKMLELQLRRIGVFSAEETISSHPNFDDSFKIMWANHGDDISIQYSGTPALKGDFVRLGQRTTQGIIKDGINALVRYYLNNFADGKKQDAIDL LQGHYIVSVSRDMKPPSQAAGGIESVASFPLAFGLIMVGLFFALLSLRQAPYDMKHLFFSLLWGSFTVGIAAFVRANGRVFCNRPRLHKPRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10035993 [exp]	0	1
AT3G51460		rhd4	ROOT HAIR DEFECTIVE4, Phosphoi...		Lus10016697 [exp]	1.0	0.9328
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10011853 [exp]	2.4	0.8784
AT3G24840			Sec14p-like phosphatidylinosit...		Lus10022790 [exp]	2.4	0.8912
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Lus10016989 [exp]	4.0	0.8300
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10004597 [exp]	4.5	0.8565
AT5G64460			Phosphoglycerate mutase family...		Lus10032819 [exp]	4.9	0.8006
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10000553 [exp]	6.0	0.8538
AT2G43240			Nucleotide-sugar transporter f...		Lus10027009 [exp]	7.2	0.8605
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Lus10040199 [exp]	11.3	0.7945
AT1G61100			disease resistance protein (TI...		Lus10018471 [exp]	14.1	0.7804

Compare expression of checked genes

Lus10035993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.