Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35610 69 / 2e-13 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT4G35700 69 / 3e-13 C2H2ZnF DAZ3 DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1) AT4G35280 50 / 6e-07 C2H2ZnF DAZ2 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) AT2G17180 45 / 4e-05 C2H2ZnF DAZ1 DUO1-ACTIVATED ZINC FINGER 1, C2H2-like zinc finger protein (.1) AT5G56200 43 / 0.0002 C2H2ZnF C2H2 type zinc finger transcription factor family (.1) AT2G26940 42 / 0.0003 C2H2ZnF C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016698 [exp] 234 / 2e-75 AT4G35700 74 / 4e-15 DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1) Lus10041659 [exp] 185 / 9e-57 AT4G35700 72 / 2e-14 DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1) Lus10041633 [exp] 145 / 7e-42 AT4G35700 48 / 2e-06 DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1) Lus10023932 [exp] 52 / 7e-08 AT4G35280 126 / 2e-35 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G100300 [exp] 75 / 2e-15 AT4G35700 68 / 4e-13 DUO1-activated zinc finger 3, zinc finger (C2H2 type) family protein (.1) Potri.004G205300 [exp] 54 / 5e-08 AT4G35280 236 / 2e-76 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.009G166200 [exp] 53 / 7e-08 AT4G35280 258 / 4e-85 DUO1-ACTIVATED ZINC FINGER 2, C2H2-like zinc finger protein (.1) Potri.001G224600 [exp] 47 / 2e-05 AT5G56200 71 / 8e-13 C2H2 type zinc finger transcription factor family (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10035994 pacid=23140992 polypeptide=Lus10035994 locus=Lus10035994.g ID=Lus10035994.BGIv1.0 annot-version=v1.0 ATGCATACTTGGTTCCTGTTCATCTTCTGCGTACTTTTCCTCTGTTTCCCTCCGCCTGCCGTCATCGTCATGCCAAAAACCAACACTCACCCTTCGTCTT CATCAGAAGATGACACCAACTCCGCTCCTACCTCTCCTCGTCTCAGCCCTGCCGCCATTGCCGCTGCTGAGGCCGCCACTTCCGCCCTCAACCTCGAACG TTCTGGGGAACAACAAGGGACCGTTGCACCAGTCTCGCAGGCTGCAACGGTGGCGACTACGACAGTTCCGCCACCGCCGCCCCCACCAGCGGCGCGGGGA CCCCATGGAGTTGGCGTTCGGATCTCTATTTCGGAAGCCGGCGAGGGTTCAATTCGATGGAGGCCTTCTGCCTCTTCCGTATGGTCTGCACCTGCTGCCA TCCCGCCGACTACCGCAAACCCGCTGCCGATGAGTCCCAACTCCATCACTACGGCCACCGCTTTACTCGAACAAGCGTTTCAACAGCCGCCGCCGCCTCC TCAAGAACCAACTAGCAATAAGCGTCAAAGAGGGGAAATGGACGTGCCGTCTGGGCCACCAGTTTGTCAAACATGCCACAAGTTATTCCGATCATGGAAG GCAGTGTTCGGACATATGCGGATGCACAAGGAACGGACCTACCGCGGGGCATTCCCTCCCCCGGTGTCCAGTGATGGATGTTCTTCAAGTAATACTATTG CTGCTACAACTCCTCCTAGAAGGAGAGGGCTGGAGATTGATCTGAACATTCAGTTCAATCCTGATGAAGATATTGATGTTCATGACCAGCAGGAGGACCA AGCTTTGACTACTCCTCCTCCTCCTCCTCCTGCTCTGGAGCCTGCATCAATTGATTTGAATGAACCGGCGGCCGCCAACAAGTCCGACGAAAAGGAGGGA GATGGAAGTACTAGCAATAATGATGAATCCAACGAATAG
AA sequence Show only first row Show all	>Lus10035994 pacid=23140992 polypeptide=Lus10035994 locus=Lus10035994.g ID=Lus10035994.BGIv1.0 annot-version=v1.0 MHTWFLFIFCVLFLCFPPPAVIVMPKTNTHPSSSSEDDTNSAPTSPRLSPAAIAAAEAATSALNLERSGEQQGTVAPVSQAATVATTTVPPPPPPPAARG PHGVGVRISISEAGEGSIRWRPSASSVWSAPAAIPPTTANPLPMSPNSITTATALLEQAFQQPPPPPQEPTSNKRQRGEMDVPSGPPVCQTCHKLFRSWK AVFGHMRMHKERTYRGAFPPPVSSDGCSSSNTIAATTPPRRRGLEIDLNIQFNPDEDIDVHDQQEDQALTTPPPPPPALEPASIDLNEPAAANKSDEKEG DGSTSNNDESNE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G35610	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10035994 [exp]	0	1
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	1.7	0.9987
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	2.4	0.9987
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	3.0	0.9987
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Lus10043000 [exp]	4.0	0.9972
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10030505 [exp]	4.5	0.9964
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10023022 [exp]	4.9	0.9951
AT1G76810			eukaryotic translation initiat...		Lus10023474 [exp]	5.3	0.9947
AT3G06240			F-box family protein (.1)		Lus10011015 [exp]	5.6	0.8312
AT5G54010			UDP-Glycosyltransferase superf...		Lus10008453 [exp]	5.7	0.9946
AT3G24060			Plant self-incompatibility pro...		Lus10017719 [exp]	6.0	0.9898

Compare expression of checked genes

Lus10035994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.