Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23230 1763 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016701 [exp] 931 / 0 AT1G23230 1096 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G133300 [exp] 2094 / 0 AT1G23230 2287 / 0.0 unknown protein Potri.010G108350 [exp] 0 / 1 AT1G23230 0 / 1 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11573 [flax] [poplar] Med23 Mediator complex subunit 23
Representative CDS sequence Show only first row Show all	>Lus10035997 pacid=23141190 polypeptide=Lus10035997 locus=Lus10035997.g ID=Lus10035997.BGIv1.0 annot-version=v1.0 ATGGATCAGAACCAGAGGTCGTTAGCCTCCACAACAACTGCTTCTCGGGGTTATCAGTTTCATCCAGCTCGAACTGCCATCCTCGACCTCTTCAATCTCT ACTTAGGAAGAAATAACCACCAAAAGCCTGATGATTCAATTCGCGAGCCACCCAATAGGGCGCAGAAGCGTGTCCATGCTCTGAATAGAGATCTTCCGCC TCGAAATGAACAGTTCATCATAGATTTTGAGCAACTGCGTATACAGTTTCCTGATCAAGACCAACTGCGCGCGGTCACTGAATCTGTACTTGTATCTCTG GTTGTCCAGTGTAGTAATCATGCCCCACGAGCTGAATTTCTTTTGTTTGCTTCGCGAATCCTGTCCAGTATAGGGTGCATAAACTGGGACAGCTTCTTGC CAGGTCTCCTTTCTTCCGTGTCCTCTGCAGAAATGACAGTGCGTCAGTCTGGTCTAGCACTGCCTGCCATTTCATCTACAGGTTTATCACAAACTGCAAT GCTTCCTTCTTCAAGTCCGATTCCCAATTCATCCATTTTTCAGACTTCTAATCCTACATCTCCGCTGCCTCTTGTTCATGGTATCGGGTCGCCTGCCCAA TCGGCCATTGAACCATTGTCTTCTCTTGCAATGTCCCCGGTTAAGTCATCAGATGTTTCGGGCAATGGACAACAATCTACTACAAGGGCCAGCTCATCTT CGAGGGATAATGCTCTAAGCAGTTTGCGGCAGCATTGTTGCAAAATTGTTCTAATTGGTTTAGGCTTTAATTTGAAGCCAGTGACTCACATCGATATTTT CTGTCATATGTTGAACTGGTTGGTGAACTGGGATCAAAAGCACCAAAGCTCTGATGAATCTGATGGCAGGAAGTCTTGGAGACCTGACAAGGCTCTTGTT GAATGGTTACATAGCTGTCTAGATGTCGTCTGGCTATTGGTTGATGAAGATAAGTGTCGTGTTCCATTTTATGAATTGTTACGCAGTGGTGTGCAATTTA TAGAGAACATACCTGATGATGAAGCCTTATTTACTCTTATCCTAGAGATACACAGGAGAAGAGATATGATGGCAATGCACATGCAAATGTTAGACCAACA CCTTCATTGCCCTACATTTGGTACTCATCGGTTTCTGTCTCATACGACTACTAATCTTTCAGTTGAAGTGGTACCAAACCTGCGATATTCCCCAATCACA TACCCTAGTGTACTTGGAGAGCCCCTGCATGGAGAGGATCTAGCGAATTCTATTCAAAAGGGAAGCTTGGACTGGGAAAGAGCGTTGCGATGCATTAGAC ATGCTCTTCGTACTACTCCATCTCCTGACTGGTGGAAGCGCGTGCTCCTTGTGGCTGCCTGCTACAGAAATCCTGCGCACGGGCCAACTCCTGGTGCTGT TTTTACTTCTAAAATAAATTGCTGGCAGGAATGGCTTGTCTTCTCTGATATATTCTTTTTTCTCATCAAAAGTGGATGCATTGATTTTGTGGATTTTGTC GACAAGCTTGTCTCACGACTCACAGGCAGTGATCAGAAGTTTCTTCGAACCAATCATGTAACATGGCTGCTTGCACAAGTTATCAAGGTTGAGCTTGTGA TGAATGCACTAAAGACAGATGCTCGAAAGGTAGAGACAATTAGAAAGATTATATCTTTCCACAGGGAGGACCGGAGTTCAGATCCCAATAATCCTCAAAG CATTCTTCTTGATTTTATAAGCAGTTGTCAGAACTTGCGTATCTGGTCATTGAACACATCAACAAGGGAATATCTGAACAACGAGCAGCTTCAGAAAGGA AAGCAAATAGATGAATGGTGGACGCAAATGGGCAAAGGGGAGCGCATGATGGATTACATGAATATGGATGATAGATCAATTGGGATGTTTTGGGTTTTCT CCTTCACCATGGCACAACCTGCCTGTGAAGCTGTAGTAAACTGGTTATCGTCGGCAGGAGTTTCTGAGTTATTGCCAGGAACAAATATACAGTCCAATGA AAGAGTGATGGTGATGAGAGAAGTAAGCCCGTTGCCAATGGCCTTATTATCTGGGCTTTCCACGAACTTATGCTTGAAGTTGGTCTTCCAATTAGAAGAT TCTCTGTTTGCGGGCCAGGTTGTTCCAAGTGTTGCTATGGTGGAAACATATTGCCGTTTGCTGCTATCTGCACCTCACTCATTGTTTAGGTCACACTTCA CGCATTTAGCCCAGAGGTATCCAGCTTTGTGGAGCAAGCCAGGGGTAACTCTTCTGGTGCTTGAAATCGTAAACTATAGGCTACTTCCTCTATACAGGTA TGAAGGCAAGAACAAAACCTTGATGTATGATGTCACCAAAATAGTTGCCACTCTAAAAGGGAAACGTGGAGATCACCGAGTATTCAGGCTGGCTGAAAAT GTGTGCATGAATCTGCTCTTATCATTAAGAGAATTTTTTTCTGTCAAAAGAGAAGGGAAGGGTCCAACAGAGTTTACTGAAACCTTGAATCGTATAACCA TAATTACTCTTGCAATCATCATAAAGACACGTGGAATTGCAGATGCTGATCATCTGCTTTATCTTCAAAGTATGTTGGAACAGATAATGGCAACCAGCCA ACATACATGGTCAGAGAAGACACTATCCCATTTCCCTCCTCTTATTCGGGATGCATTAACTGGGAGAATGGATAAGCGGGGTTTGAGTATTCAAGCATGG CAACAGGCAGAAACGACCGTGATTAACCAGTGTACACAGCTTCTCTCACCATCTGCTGATCCTAGCTATGTCATGACATATATCAATCATAGTTTTCCTC AGCATCGACAATATCTTTGTGCTGGTGCATGGATTCTTATGCAGGAGCACCCTGAAAGCATTAACAGTGGACATTTGGCACATGTTCTGAGAGAATTTTC ACCTGAAGAAGTGACAGACAATATATATACAATGGTGGATGTCCTCCTGCACCATATTCATGTTGAACTTCAACATGGACATTCATTGCAGGACCTTTTG ATGAAAATTTGTGCAAACCTTGCATATTTTGTTTGGACAAATGAGTTGCTTCCGTTGGATATTTTGCTCCTAGCGCTCATTGACAGAGATGATGATCCAC ATGCATTGCGAATTGTGATTAGTTTGCTTGATAGGCAAGAGCTTCAACAAAGAGTCAAACTCTTCTGTTTAAATCGTGGGCCTCCTGAACACTGGCTTCA CTCAGGAATTTTCAAGCGCCTAGAGTTACACAAGGCTCTTGGGAATCATCTTTCTTGGAAAGACAGGAATCCGACATTCTTCGACGACGTGGCATTACGG TTACTCCCAGTAATTCCTTTGATTGTGTATCGGCTTATTGAGAACGATGCCATAGACCCTGCTGACAGAGTTCTGGCCATGTATTCTCCATTTCTAGCGT ATCACCCTTTCAGATTCACTTTTGTTCGCGACATACTTGCATATTTCTATGGTCATCTTCCTGGAAAGCTGATTGTGCGTATATTGAACGTGTTGGACCT TAGCAAGATCTCATTTTCTGAATCATTCCCGCAGCACATTAGTTCGTCAAACCCTGTTATGTGCCCGCCACCTGAGTACTTTGCAACTCTTTTGTTGGGG CTGGTAAACAATGTAATACCTCCATTACATGTAAACTCGAAGTATGGGTCAATTGGGGAATGTCTAAACCTTTCGGGGCGCACGTCACATAGCAAGACTC CAGGAACATCTCAATCAAGTCCTGCAAACAGTTTTGAGGGACAGAAGGCTTTCTATCAAATTCAGGATCCTGGAACACATACTCAGCTTGTTCTCGAAAC TGCAGTGATAGAGCTGCTGTCACTGCCCGTGCTAATGATACAGGCATGTGGCTTGCTACTGGCTCAGCTACCTCCCGATTTTCATATGCAACTCTATGCC GAGGCATCACGTATAGTGAAAGAGACTTGGTGGCTTAGTGATGACAAAAGGTCATTGGGAGAACTAGATTCTGCAGTTGGCTATGCTTTGCTGGACCCAA CTTGGGCTGCTCAAGACAACACCTCCACTGCTATTGGTAATGTTATTGCACTTCTGCATTCATTTTTCGGAAATCTCCCTCAGGAATGGCTGGAAGGTAC GCATGTGATAATTAAAAACCTTCAGCCTATAAAATCAGCTGCAATGCTGAGAATAGCCTTCCGGATCATGGGTCCATTACTTCCAAGACTGGCAAATGCT CATGCGATTTTCAACAAGACGTTGTCATTGCTTCTAAACATGATGGTTGATGTGTTTGGGAGGAACTCTGAACCATCGACGACAGGAGGGGCATCAGAAA TAGCAGATATCATTGATTTCCTGCATCATGTGGTGCACTATGAAGGACAAGGCGGAGCAGTGCAGGGTAACAGCAAGCCGAGAGCAGAGGTTCTTGCTCT TTGTGGTAGAGCCATTGAGAATCTACGACCTGATGTTCAACACCTTCTTTCCCATTTGTCCCCAGATATGAATTCTTCCATATATGCCTCTACCCATCCA AAGCTGCTCCAAAACCCTTCTTGA
AA sequence Show only first row Show all	>Lus10035997 pacid=23141190 polypeptide=Lus10035997 locus=Lus10035997.g ID=Lus10035997.BGIv1.0 annot-version=v1.0 MDQNQRSLASTTTASRGYQFHPARTAILDLFNLYLGRNNHQKPDDSIREPPNRAQKRVHALNRDLPPRNEQFIIDFEQLRIQFPDQDQLRAVTESVLVSL VVQCSNHAPRAEFLLFASRILSSIGCINWDSFLPGLLSSVSSAEMTVRQSGLALPAISSTGLSQTAMLPSSSPIPNSSIFQTSNPTSPLPLVHGIGSPAQ SAIEPLSSLAMSPVKSSDVSGNGQQSTTRASSSSRDNALSSLRQHCCKIVLIGLGFNLKPVTHIDIFCHMLNWLVNWDQKHQSSDESDGRKSWRPDKALV EWLHSCLDVVWLLVDEDKCRVPFYELLRSGVQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRFLSHTTTNLSVEVVPNLRYSPIT YPSVLGEPLHGEDLANSIQKGSLDWERALRCIRHALRTTPSPDWWKRVLLVAACYRNPAHGPTPGAVFTSKINCWQEWLVFSDIFFFLIKSGCIDFVDFV DKLVSRLTGSDQKFLRTNHVTWLLAQVIKVELVMNALKTDARKVETIRKIISFHREDRSSDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKG KQIDEWWTQMGKGERMMDYMNMDDRSIGMFWVFSFTMAQPACEAVVNWLSSAGVSELLPGTNIQSNERVMVMREVSPLPMALLSGLSTNLCLKLVFQLED SLFAGQVVPSVAMVETYCRLLLSAPHSLFRSHFTHLAQRYPALWSKPGVTLLVLEIVNYRLLPLYRYEGKNKTLMYDVTKIVATLKGKRGDHRVFRLAEN VCMNLLLSLREFFSVKREGKGPTEFTETLNRITIITLAIIIKTRGIADADHLLYLQSMLEQIMATSQHTWSEKTLSHFPPLIRDALTGRMDKRGLSIQAW QQAETTVINQCTQLLSPSADPSYVMTYINHSFPQHRQYLCAGAWILMQEHPESINSGHLAHVLREFSPEEVTDNIYTMVDVLLHHIHVELQHGHSLQDLL MKICANLAYFVWTNELLPLDILLLALIDRDDDPHALRIVISLLDRQELQQRVKLFCLNRGPPEHWLHSGIFKRLELHKALGNHLSWKDRNPTFFDDVALR LLPVIPLIVYRLIENDAIDPADRVLAMYSPFLAYHPFRFTFVRDILAYFYGHLPGKLIVRILNVLDLSKISFSESFPQHISSSNPVMCPPPEYFATLLLG LVNNVIPPLHVNSKYGSIGECLNLSGRTSHSKTPGTSQSSPANSFEGQKAFYQIQDPGTHTQLVLETAVIELLSLPVLMIQACGLLLAQLPPDFHMQLYA EASRIVKETWWLSDDKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNVIALLHSFFGNLPQEWLEGTHVIIKNLQPIKSAAMLRIAFRIMGPLLPRLANA HAIFNKTLSLLLNMMVDVFGRNSEPSTTGGASEIADIIDFLHHVVHYEGQGGAVQGNSKPRAEVLALCGRAIENLRPDVQHLLSHLSPDMNSSIYASTHP KLLQNPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23230			unknown protein		Lus10035997 [exp]	0	1
AT1G23230			unknown protein		Lus10016701 [exp]	1.0	0.9544
AT5G25270			Ubiquitin-like superfamily pro...		Lus10040001 [exp]	2.8	0.9152
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10041704 [exp]	4.5	0.8826
AT2G16940			Splicing factor, CC1-like (.1....		Lus10005059 [exp]	5.5	0.8472
AT1G11060			WAPL (Wings apart-like protein...		Lus10005857 [exp]	6.0	0.8582
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10027958 [exp]	6.7	0.8628
AT4G15475			F-box/RNI-like superfamily pro...		Lus10012764 [exp]	6.9	0.8745
AT4G10970			unknown protein		Lus10032393 [exp]	7.7	0.8573
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	8.8	0.8695
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10014505 [exp]	9.0	0.8933

Compare expression of checked genes

Lus10035997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.