Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71010 1593 / 0 FAB1C FORMS APLOID AND BINUCLEATE CELLS 1C (.1) AT4G33240 1164 / 0 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) AT3G14270 813 / 0 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G34260 415 / 2e-120 FAB1D FORMS APLOID AND BINUCLEATE CELLS 1A (.1) AT1G10900 86 / 1e-16 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1) AT1G60890 83 / 1e-15 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) AT5G26360 78 / 2e-14 TCP-1/cpn60 chaperonin family protein (.1) AT1G77740 75 / 3e-13 PIP5K2 phosphatidylinositol-4-phosphate 5-kinase 2 (.1) AT3G09920 75 / 5e-13 PIP5K9 phosphatidyl inositol monophosphate 5 kinase (.1.2.3) AT1G21980 72 / 2e-12 ATPIPK1, ATPIP5K1 phosphatidylinositol-4-phosphate 5-kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016702 [exp] 3072 / 0 AT1G71010 1149 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Lus10038127 [exp] 789 / 0 AT4G33240 1429 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10005176 [exp] 466 / 6e-137 AT4G33240 1046 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10038129 [exp] 462 / 1e-135 AT3G14270 1144 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Lus10005173 [exp] 463 / 2e-135 AT4G33240 1063 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3) Lus10028710 [exp] 434 / 7e-127 AT1G34260 1186 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Lus10006051 [exp] 350 / 2e-98 AT1G34260 1175 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Lus10040514 [exp] 81 / 6e-15 AT5G26360 996 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10034682 [exp] 80 / 7e-15 AT5G26360 1016 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G113700 [exp] 2033 / 0 AT1G71010 1728 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Potri.008G128800 [exp] 1977 / 0 AT1G71010 1714 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1C (.1) Potri.003G072300 [exp] 1193 / 0 AT3G14270 2157 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.001G163200 [exp] 863 / 0 AT3G14270 2134 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1) Potri.013G116400 [exp] 780 / 0 AT1G34260 1184 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Potri.019G087000 [exp] 456 / 3e-133 AT1G34260 1190 / 0.0 FORMS APLOID AND BINUCLEATE CELLS 1A (.1) Potri.T046300 [exp] 84 / 4e-16 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 83 / 7e-16 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.003G019100 [exp] 83 / 1e-15 AT1G60890 1004 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2) Potri.001G211200 [exp] 81 / 4e-15 AT1G60890 1041 / 0.0 Phosphatidylinositol-4-phosphate 5-kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF01504 [flax] [poplar] PIP5K Phosphatidylinositol-4-phosphate 5-Kinase CL0016 [flax] [poplar] PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10035998 pacid=23141109 polypeptide=Lus10035998 locus=Lus10035998.g ID=Lus10035998.BGIv1.0 annot-version=v1.0 ATGGGAATACCTGATACTTCTCTACTGGAGAAGGTTAAGTCTTGGATTGCTTGGGGAGGAAGCGATTTATCACCATCATCTTCAGTGTCCACTGAATTTG AGATGAACAATAGCGAGTGCAATACAAGTTCTAATGAGCATTCTAACGGATATCATTGTGATAGCTGTGGCCGATGGGTGTGTCTGAAATGCATCAAAGA ACTGGTGTCTCATCATGTTGTTGAGTCTACTGGCGTTGAACAAAATGTCCATTCCGAGGAACCTATCAAATTATGCATGTTTTGCGGCCTGCCTATAAAG ATCAGTGAAAAGGTGCATCCCGCAGACTCTCCCCGTGAAAGCCCTGAGCCACCTTCGCCATCTTTTAGCGGCGAATCTATCCAAGGTGATCGTCTTGCCC GCTATCTTGAATCACGGGACTGTGGATATTCTCCCCTTTCAGTAACCTGCAACAATATGAATGCCTTTGGCCCTCTTCCATGCCTTGCTTCTGTTCGCTG TTCTCGTAGCAGGGAAGGAGATGAAGAGCAGGCGGAGGATGCCGAGAAGCACTTTCACAGCCCATCTAATGAATATATATCTGATGTAGATTCAAGTAGT ATTAGCTCTAGGCTTGAGTTTTGCAGTTTTAAGTCGGTGGGTTCAAGTCCTTTTGATAGCCCATCTTCTGGAACTGATTTTACTTCTTATAATAGAATGG GGCATGCTGTACAGCAGGGGCAAGAAGATAGCCCCTTGTCCCTGAGAGATGGTCCGTTGGATCAAGAAAATATGGCAGTTTTGAGACGGCCTGAAATACG AGCAGCAGACCCAGATAATGCAGATGATTACTCTGATGATCTCTCAGCTTCAAGAAATCATTATGAAAAGAAACCTTGGGACTTTGAAAGTAACGGACTT ATCTGGTCCCCCCCTCTTCCCGTGGATGAAAATGATGATGCTGAAAGTAATTTCTTTGCTTATGACGATGACGATGACTATTTTACTGGGGATAGTGTAA CCTTCTCAACAAGTAGCAGCCTTTCACGTACATTTTCAGCCAAGGAAAGACAGAGTGATGGTAACAAAGAGCCTCTGAAATTCGCAATACAAGAACACTT TAAGGCTCTGGTATCCCAACTTCTGCAGGGGGAGGGAATCCAAACCAGCGGGGTTGATAGCAGTGAAGATTGGTTGGATATAGTTACTACGTTAGCATGG CAAGCTGCAAATTTCGTGAAACCTGATACTAGAAGAGGAGGCAGTATGGACCCTGTTGATTATGTAAAGGTGAAGTGTATAGCATCAGGAATTCCAATTG ATAGTGCCCTAATAAAGGGAGTTGTTTGTTCGAAAAACATAAAGCATAAGCGCATGACAACACAATACAAAAACCCCAGATTACTACTTCTTGGGGGAGC TCTGGAATATCGAAGTGTTACTAATCAACTGGCATCCTTTAATACATTGGTGCAAGAGGAAAATGATCATCTGAAGATGATTATTTCCAAGATAGAGGCT CTGCGCCCCAATGTTCTGCTAGTGGAGAAAAATGTATCTCCATATGCCCAAGAATATCTGTTGACAAAGGAAATATCTTTGGTTCCGAATGTGAAGAAAC CATTGATGGAATGCATAGCACGGTGCACTGGCGCTCTTATTAGTCCATCAATTGATACAATCTCAACTACACGGTTGGGTAACTGTGAACTCTTCCGCGT GGAGAGATTTTTGGAGGAACATGAGCCTGCTAATCAGTTCAACAAGAAGCCAACCAAGACTTTGATGTTCTTCGAAGGATGTCCAAGACGTTTGGGCTGC ACGGTCCTTCTGAGGGGCAAGTGCTGCGATGAACTCAAGAAAATTAAGCATGTTGTTCAATATGCTGTTTTTGCCGCATATCACTTATCCCTTGAGACTT CGTTCCTTGCTGATGAAGGTGCAAGTCTTCCTAAGATGAAATCTGAACAAACGGTTACCGTGCCAGCAGACGAAGGGATGTCAGTCGTTCCTTCAAACAA GTTTGATGCAATTGCTGACTATTGTTCCGATGATAATGATCATACAGGATTGGAGTTGGTGTCTGAAAATATTGATGCTTATGGCACTACTCAGTCTCTT GTTCCTGTCAATAATAGCATTGGAGATACACTCCCTGATTTATGCCATATTCCTCTGTCGAACTCAGTCTTACAACACTTTGCTACTTGTGGTTGTAATA TGCCGATGACGTCTAGAGTTCCTGTCCTGGATGTTAATAGTCTTTCTCATCCTGAGTTGTTAGATATCATTGCCGATCAACCGAGCCAAGTAGATGAGAC CTTAGAGTTGGAGAAATCTGACCGGACTGATGGACATGGTGTATCTAATGATTATTTATTGGCATCTGATACTTATCAGAGCATATTGGTCTCATTTTCA AGCCGCTGTGTACCAAAAGGAACTGTATGTGAACGTTCTCGACTCCTGCGTATAAAATTTTATGGATCATTTGATAAACCACTTGGAAGATATCTTCGTG ATGACCTCTTTGATCAGACATCTTTTTGTAGGAGTTGTAAGGAGCCAGCTGAATCGCATGTATTATGTTATACTCACCAGCAAGGGAATCTTACAATTAA CGTGAGGTCCCTTCCCTCTATTAAGCTTCCTGGCGAACAAGATGGTAAAATATGGATGTGGCACAGATGCTTGAGGTGTGCTCATGTAGATGGAGTCCCA CCGTCAACTCGTAGGGTAATTATGTCAGATGCTGCTTGGGGACTTTCATTTGGGAAGTTCTTGGAATTGAGCTTTTCAAACCATGCAACTGCAGATCGTG TTGCTCCATGTGGTCATTCATTACAGAAAGATTGTCTTCGCTTCTATGGGTTTGGGAGCATGGTTGGATTCTTTCGTTATTCTCCTATTGATATTCTTAA TGTACATCTGCCACCTTCGGTGCTGGAATTTACGGGCATTTGTCAGCAAGAGTGGATCAAAAAAGAGGCAGCCGAGCTTCTTAGCAAGGTTGAAATCTTT TACTCGGAGATTTCTAATGTGCTTGATAGCTTGGAAGGGAGAAGTAAGTCATATGGTTGTCAATTGTCCGAGGCAACTGAGCTGCAGAATCATATTCTTG ATTTGAAAGTTCAACTTGTAAAGGAGAGGAGCAACTATTCTGAAACTCTGAAACTTGCTGTCATGGAGAGTCTACCACCAGGCCAGGAAGGTTTAGACAT TCTGGAGCTCAATCGTACAAGGCGTTCCCTCATAATTGACTCGCGTGTCTGGGACCGTCAAATATATTCGCTAGATTCTCTCCTTAAGACAATTGCGACT ATTCGTCCTAAACAAAAGGTTGTGTGTCAAAATATCACGATGGCAGGAAGTGGCGATTCTTTGGGATGTCCAGAACCACTTTGTTCTGGTAATGATCACC CGTTTGAGCAGGGAGTGATCAGTCACTTAGCTGAGCAATCTCTTTCTGAAGATTTAGTATTATCTTCTCGTCATGTTCATAGACAGGAGGATGTGCATTC GGATGGTGAGCCTAGCATAACCAAGACTATGACTGACCGCATTGCTTGTGATGCATCCAATTTGTCTGACAGAATCGATTCTGCATGGAGTGGTACTAAT CAATGTGCTATGAAAGTTCAGGAACTGGACTCATCTGACAATAGTGGGCTGAGGGTTGCTACTAATTCTCCTCTGAAAAGAATGATGGGACCAGTAAGAG TTAATTCTTTTGACTCTGCATTGAGAGTCCAAGAACGAATACAGAAAGGAACGCCGTTCTCGAATCTCCGATCATTCCATGCTTCTGGAGATTACAGGAC TATGTTGAGAGATCCCGTATCAAACACTTCGAGGACTTACTCTCAATCTCAAGCATCACCTTTGGAGACACAGAGGTCAAATGTATTATCTGCGACACCT TCGTTTATATCTTCTGCATCTGACATGACTGGGGGAGCTCGATTTCTGCTTCCTCACAGGACTCACAGTGACGTAGTGATTGGTGTTTATGATGATGATC CTGCCAGCATAGTATCTTATGCTCTCAATTTGAAAGAACACGAGGATTGGGTAGCAGCTAACAAGTCAAATGAGATTGGAGGCAAATGCAATATAGGTGT TCTGGGGAGGGAAGATTCTGCTGCTTCCATGATATCAGGATGGCAATCTTTTGGTTCCTTGGACTTCGACTATATGAATTACGGATCTGAAGGAATATCA TCTTCCATCAGTAACTTGTTCACAGATTCCAAGAAATCCCCACATTTTGGAGTATCTTATAATGATGCTTCTTCTGGTGTTGGAGGTAAAGTGAAGTACT CAGTGACCTGCTATTTTGCCAACCAGTTTCACTTGTTGAGGAAGAAATGCTGCCCGAGTGATGTTGATTTTGTTCGGTCCTTAAGCCGCTGCCAGAAATG GAGTGCACAGGGTGGGAAAAGCAACGTCTACTTTGCTAAATCATTGGATGAGCGTTTCATTTTAAAACAAGTTAAGAAGACAGAGTTGGAATCCTTTGAG GAATTTGCACCTGAATATTTCAAATATGTAACAGAGTCTTTGAACTCTGGAAGTCCAACTTGCCTTGCAAAAATTCTTGGAATATATCAGGTTGCTGTAA AGCACTTAAAAAGTGGCAGAGAAACAAAGATGGATTTAATGGTAATGGAGAACCTGTTTTTTAGGAGAAAAATATCTAGGGTATATGACCTTAAGGGCTC TACACGGTCTCGTTACAATCCTGATAGTACAGGAGTGTTGCTGGATATGAATTTAGTGGAGGAATTGCGAACAGAACCCATATTTCTGGGGAGCAAAGCA AAAAGAAGCCTAGAGAGAGCAATATGGAATGACACATCTTTTCTAGCGTCAGTAGATGTCATGGACTACTCGTTGCTGGTAGGAGTGGACGAGGAGAAGA AGGAATTGGTTTTAGGGATAATAGACTTCATGAGACAATATACTTGGGACAAGCACTTGGAGACATGGGTAAAAGCATCCGGAATACTTGGGGGTCCGAA AAATGCTTCTCCGACGATCATTTCTCCGGTTCAGTACAAAAAGAGATTTCGAAAGGCAATGACTTCCTACTTTCTCACGGTTCCTGATCAGTGGTCTTCA TGA
AA sequence Show only first row Show all	>Lus10035998 pacid=23141109 polypeptide=Lus10035998 locus=Lus10035998.g ID=Lus10035998.BGIv1.0 annot-version=v1.0 MGIPDTSLLEKVKSWIAWGGSDLSPSSSVSTEFEMNNSECNTSSNEHSNGYHCDSCGRWVCLKCIKELVSHHVVESTGVEQNVHSEEPIKLCMFCGLPIK ISEKVHPADSPRESPEPPSPSFSGESIQGDRLARYLESRDCGYSPLSVTCNNMNAFGPLPCLASVRCSRSREGDEEQAEDAEKHFHSPSNEYISDVDSSS ISSRLEFCSFKSVGSSPFDSPSSGTDFTSYNRMGHAVQQGQEDSPLSLRDGPLDQENMAVLRRPEIRAADPDNADDYSDDLSASRNHYEKKPWDFESNGL IWSPPLPVDENDDAESNFFAYDDDDDYFTGDSVTFSTSSSLSRTFSAKERQSDGNKEPLKFAIQEHFKALVSQLLQGEGIQTSGVDSSEDWLDIVTTLAW QAANFVKPDTRRGGSMDPVDYVKVKCIASGIPIDSALIKGVVCSKNIKHKRMTTQYKNPRLLLLGGALEYRSVTNQLASFNTLVQEENDHLKMIISKIEA LRPNVLLVEKNVSPYAQEYLLTKEISLVPNVKKPLMECIARCTGALISPSIDTISTTRLGNCELFRVERFLEEHEPANQFNKKPTKTLMFFEGCPRRLGC TVLLRGKCCDELKKIKHVVQYAVFAAYHLSLETSFLADEGASLPKMKSEQTVTVPADEGMSVVPSNKFDAIADYCSDDNDHTGLELVSENIDAYGTTQSL VPVNNSIGDTLPDLCHIPLSNSVLQHFATCGCNMPMTSRVPVLDVNSLSHPELLDIIADQPSQVDETLELEKSDRTDGHGVSNDYLLASDTYQSILVSFS SRCVPKGTVCERSRLLRIKFYGSFDKPLGRYLRDDLFDQTSFCRSCKEPAESHVLCYTHQQGNLTINVRSLPSIKLPGEQDGKIWMWHRCLRCAHVDGVP PSTRRVIMSDAAWGLSFGKFLELSFSNHATADRVAPCGHSLQKDCLRFYGFGSMVGFFRYSPIDILNVHLPPSVLEFTGICQQEWIKKEAAELLSKVEIF YSEISNVLDSLEGRSKSYGCQLSEATELQNHILDLKVQLVKERSNYSETLKLAVMESLPPGQEGLDILELNRTRRSLIIDSRVWDRQIYSLDSLLKTIAT IRPKQKVVCQNITMAGSGDSLGCPEPLCSGNDHPFEQGVISHLAEQSLSEDLVLSSRHVHRQEDVHSDGEPSITKTMTDRIACDASNLSDRIDSAWSGTN QCAMKVQELDSSDNSGLRVATNSPLKRMMGPVRVNSFDSALRVQERIQKGTPFSNLRSFHASGDYRTMLRDPVSNTSRTYSQSQASPLETQRSNVLSATP SFISSASDMTGGARFLLPHRTHSDVVIGVYDDDPASIVSYALNLKEHEDWVAANKSNEIGGKCNIGVLGREDSAASMISGWQSFGSLDFDYMNYGSEGIS SSISNLFTDSKKSPHFGVSYNDASSGVGGKVKYSVTCYFANQFHLLRKKCCPSDVDFVRSLSRCQKWSAQGGKSNVYFAKSLDERFILKQVKKTELESFE EFAPEYFKYVTESLNSGSPTCLAKILGIYQVAVKHLKSGRETKMDLMVMENLFFRRKISRVYDLKGSTRSRYNPDSTGVLLDMNLVEELRTEPIFLGSKA KRSLERAIWNDTSFLASVDVMDYSLLVGVDEEKKELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNASPTIISPVQYKKRFRKAMTSYFLTVPDQWSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10035998 [exp]	0	1
AT1G71010		FAB1C	FORMS APLOID AND BINUCLEATE CE...		Lus10016702 [exp]	1.0	0.9736
AT1G17450			B-block binding subunit of TFI...		Lus10000369 [exp]	2.8	0.8589
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Lus10032660 [exp]	4.9	0.8073
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	8.7	0.8076
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Lus10019908 [exp]	9.7	0.8074
AT1G17450			B-block binding subunit of TFI...		Lus10022088 [exp]	12.3	0.7584
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Lus10032413 [exp]	14.1	0.7953
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10027024 [exp]	16.7	0.7995
AT4G12010			Disease resistance protein (TI...		Lus10023051 [exp]	21.6	0.7772
AT5G02810		APRR7, PRR7	pseudo-response regulator 7 (....		Lus10014018 [exp]	23.4	0.7312

Compare expression of checked genes

Lus10035998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.