Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37810 344 / 7e-120 NIP4;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) AT5G37820 339 / 4e-118 NIP4;2, NLM5 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) AT4G18910 308 / 2e-105 ATNLM2, NIP1;2, NLM2 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) AT4G19030 288 / 6e-98 ATNLM1, AT-NLM1, NLM1, NIP1;1 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) AT1G31885 272 / 4e-91 NIP3;1 NOD26-like intrinsic protein 3;1 (.1) AT2G34390 229 / 1e-74 NIP2;1, NLM4 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 2;1 (.1) AT1G80760 205 / 4e-65 NLM7, NIP6;1 NOD26-like intrinsic protein 6;1 (.1) AT4G10380 190 / 2e-59 AtNIP5;1, NIP5;1, NLM6, NLM8 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) AT3G06100 155 / 7e-46 NIP7;1, NLM8, NLM6 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 7;1 (.1) AT3G16240 112 / 7e-30 DELTA-TIP1, ATTIP2;1, AQP1, DELTA-TIP delta tonoplast integral protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029274 [exp] 306 / 4e-105 AT4G18910 382 / 6e-135 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10007322 [exp] 239 / 3e-80 AT4G18910 276 / 2e-94 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Lus10016703 [exp] 227 / 7e-76 AT5G37810 157 / 1e-48 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Lus10024066 [exp] 213 / 5e-68 AT1G80760 416 / 2e-147 NOD26-like intrinsic protein 6;1 (.1) Lus10028520 [exp] 223 / 1e-67 AT5G37820 215 / 4e-64 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Lus10020929 [exp] 201 / 1e-63 AT4G19030 219 / 6e-70 NOD26-LIKE INTRINSIC PROTEIN 1;1, NOD26-like major intrinsic protein 1 (.1) Lus10010153 [exp] 200 / 6e-63 AT4G10380 450 / 6e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10017358 [exp] 198 / 3e-62 AT4G10380 446 / 2e-159 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Lus10033268 [exp] 191 / 2e-59 AT4G10380 449 / 1e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G112900 [exp] 389 / 6e-138 AT5G37810 332 / 2e-115 NOD26-LIKE MIP 4, NOD26-like intrinsic protein 4;1 (.1) Potri.017G128200 [exp] 350 / 3e-122 AT5G37820 350 / 3e-122 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Potri.011G072100 [exp] 308 / 1e-105 AT4G18910 406 / 3e-144 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.004G063000 [exp] 306 / 5e-105 AT4G18910 386 / 4e-136 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.017G083300 [exp] 223 / 3e-72 AT4G18910 229 / 2e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.002G097000 [exp] 213 / 1e-68 AT4G18910 229 / 3e-74 NOD26-LIKE INTRINSIC PROTEIN 2, NOD26-like intrinsic protein 1;2 (.1) Potri.001G046800 [exp] 211 / 2e-67 AT1G80760 371 / 1e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.003G180900 [exp] 211 / 2e-67 AT1G80760 370 / 2e-129 NOD26-like intrinsic protein 6;1 (.1) Potri.001G455000 [exp] 194 / 6e-61 AT4G10380 447 / 7e-160 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1) Potri.011G146900 [exp] 189 / 6e-59 AT4G10380 450 / 4e-161 NOD26-LIKE MIP 8, NOD26-LIKE MIP 6, NOD26-like intrinsic protein 5;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00230 [flax] [poplar] MIP Major intrinsic protein
Representative CDS sequence Show only first row Show all	>Lus10035999 pacid=23141045 polypeptide=Lus10035999 locus=Lus10035999.g ID=Lus10035999.BGIv1.0 annot-version=v1.0 ATGGTGGATCAGAATGAGGTAATAATTTCAAAGATGGAAGAAGGGCAAAATAAATGCGTGAGCTCGGAGCTGTGGTCATCGGCTGAAACAGTGAAGTTGC TGCAGAAGATATTTGCAGAGATAGTTGGGACATATTTCGTAATATTTGCAGGGTGTGGGTCGGTGGCGATAAACAAAACATACGGCGACGTAACGTTCCC AGGTATCTGCGTCGTTTGGGGTTTGATTGTCATGGTCATGGTTTACTCCCTCGGCCATATCTCCGGCGCCCATTTCAATCCTGCCGTCACCATTACTTTC GCCATTTTCAGAAAGTTCCCTCTCAAGCACGTTCCGCTGTACATGGCATCACAACTACTCGGATCCACAATGGCAAGTGGGACTTTGTGTCTTCTATTCC ACATTCCAGAGGATGCCTATTTCGGAACAGTCCCAGTTGGACCCAACATTCGCTCTTTCGTTCTGGAGATAATAATCTCCTTCCTACTGATGTTCGTTAT CTCCGGCGTCGCAACTGATAACAGAGCCGTCGGCGAACTCGCTGGAATCGCTGTCGGAATGACGATTACGCTGAACGTGTTTGTTGCTGGGCCGGTATCT GGAGCATCCATGAATCCAGCAAGGAGTCTAGGCCCAGCAATCGTGATGAATACGTACAAAGGGATATGGGTTTATATAGTTGGGCCGCCCATAGGTACAA TACTGGGAGGCTTCGCGTACAACCTCATTAGACATACCAACAAACCTCTTAGTGAGTTAACCAAGAGTGCTACCCTTATGAGGAGCGTTAGGGCATAA
AA sequence Show only first row Show all	>Lus10035999 pacid=23141045 polypeptide=Lus10035999 locus=Lus10035999.g ID=Lus10035999.BGIv1.0 annot-version=v1.0 MVDQNEVIISKMEEGQNKCVSSELWSSAETVKLLQKIFAEIVGTYFVIFAGCGSVAINKTYGDVTFPGICVVWGLIVMVMVYSLGHISGAHFNPAVTITF AIFRKFPLKHVPLYMASQLLGSTMASGTLCLLFHIPEDAYFGTVPVGPNIRSFVLEIIISFLLMFVISGVATDNRAVGELAGIAVGMTITLNVFVAGPVS GASMNPARSLGPAIVMNTYKGIWVYIVGPPIGTILGGFAYNLIRHTNKPLSELTKSATLMRSVRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37810		NIP4;1, NLM4	NOD26-LIKE MIP 4, NOD26-like i...		Lus10035999 [exp]	0	1
AT2G39300			unknown protein		Lus10019883 [exp]	14.0	0.7427
AT5G40382			Cytochrome c oxidase subunit V...		Lus10022249 [exp]	14.2	0.7268
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10030430 [exp]	14.4	0.6958
AT1G26570		UGD1, ATUGD1	UDP-glucose dehydrogenase 1 (....		Lus10021639 [exp]	16.3	0.7571
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10034742 [exp]	46.3	0.6958
AT5G42120			Concanavalin A-like lectin pro...		Lus10029769 [exp]	48.6	0.6980
AT3G58310			Domain of unknown function (DU...		Lus10042124 [exp]	69.9	0.5930
AT5G66720			Protein phosphatase 2C family ...		Lus10001655 [exp]	75.3	0.5792
AT4G23020			unknown protein		Lus10006336 [exp]	78.1	0.6710
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10033282 [exp]	84.7	0.6304

Compare expression of checked genes

Lus10035999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.