Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71090 450 / 4e-158 Auxin efflux carrier family protein (.1) AT5G01990 193 / 3e-58 Auxin efflux carrier family protein (.1) AT1G76520 118 / 3e-30 Auxin efflux carrier family protein (.1.2) AT2G17500 101 / 5e-24 Auxin efflux carrier family protein (.1.2.3.4) AT5G65980 99 / 4e-23 Auxin efflux carrier family protein (.1) AT1G20925 94 / 5e-21 Auxin efflux carrier family protein (.1) AT1G76530 63 / 9e-11 Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016704 [exp] 585 / 0 AT1G71090 481 / 2e-170 Auxin efflux carrier family protein (.1) Lus10002280 [exp] 170 / 2e-50 AT1G71090 324 / 9e-109 Auxin efflux carrier family protein (.1) Lus10035610 [exp] 166 / 1e-47 AT5G01990 605 / 0.0 Auxin efflux carrier family protein (.1) Lus10003240 [exp] 166 / 3e-46 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1) Lus10012708 [exp] 115 / 4e-29 AT5G65980 494 / 2e-175 Auxin efflux carrier family protein (.1) Lus10001303 [exp] 111 / 2e-27 AT5G65980 491 / 6e-174 Auxin efflux carrier family protein (.1) Lus10035978 [exp] 111 / 2e-27 AT5G65980 486 / 2e-172 Auxin efflux carrier family protein (.1) Lus10025166 [exp] 107 / 3e-26 AT1G76520 455 / 8e-160 Auxin efflux carrier family protein (.1.2) Lus10002281 [exp] 96 / 5e-25 AT1G71090 103 / 1e-27 Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G127700 [exp] 488 / 2e-173 AT1G71090 660 / 0.0 Auxin efflux carrier family protein (.1) Potri.010G115200 [exp] 472 / 6e-167 AT1G71090 607 / 0.0 Auxin efflux carrier family protein (.1) Potri.004G093200 [exp] 407 / 2e-141 AT1G71090 513 / 1e-180 Auxin efflux carrier family protein (.1) Potri.017G122400 [exp] 405 / 1e-140 AT1G71090 580 / 0.0 Auxin efflux carrier family protein (.1) Potri.016G141700 [exp] 188 / 4e-56 AT5G01990 622 / 0.0 Auxin efflux carrier family protein (.1) Potri.006G112200 [exp] 178 / 2e-52 AT5G01990 602 / 0.0 Auxin efflux carrier family protein (.1) Potri.001G456400 [exp] 118 / 4e-30 AT1G76520 419 / 1e-145 Auxin efflux carrier family protein (.1.2) Potri.001G456300 [exp] 113 / 2e-28 AT1G76520 382 / 5e-131 Auxin efflux carrier family protein (.1.2) Potri.011G145600 [exp] 106 / 9e-26 AT1G76520 368 / 2e-125 Auxin efflux carrier family protein (.1.2) Potri.002G003500 [exp] 105 / 1e-25 AT1G20925 499 / 4e-176 Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10036000 pacid=23141194 polypeptide=Lus10036000 locus=Lus10036000.g ID=Lus10036000.BGIv1.0 annot-version=v1.0 ATGACTGCCTTTGGAAACACTGGAAATCTGCCCCTAGCAATTGTTGGATCTGTTTGTCATAGTAAAGATAACCCATTTGGTCCCCACTGTCACTCTAGAG GTGTTGCTTATGTCTCGTTTTCCCAGTGGGTCGCTGTTATTCTTGTTTATACCTTTGTTTATCATATGATGGAGCCACCATTGGAGTACTATGAGATTGT TGAGGACGAGATTGAAGAGGTCGGGCCTTCTGAAGATGTCAGCAGGCCTCTCCTTGTAGAAGCTGAATGGCCAGGTATGGAAGACAAAGAAACTGAGCAT TCCAAGTCACCTTTTATTGCCAGGGTCTTCAATAGCATCTCTTCTCTATCACAGACCAACTTCCCGGATCTTGATATGTCAGTCGAAACTTGTCCCACTA GTCCCAGGTCAATTAGGTGTCTGGCTGAGCCTAGAGTTGTGAGGAAGATGAGGGTTGTAGCTGAACAAACTCCCATACAGCATATACTTCAACCTCCGAC TATCGCCTCTCTGTTAGCCATCATTATTGGAACAGTACCTCAACTGAGAGCATTTGTGTTTGGAAATGATGCTCCCCTTTCTTTCATTAAGGACAGTTTC GAAATCTTAGGTGGTGCCATGGTACCTTCTGTGATGCTTGTTCTTGGTGGTATGCTTGCTGAGGGGCCTAACGACTCGACTATTGGTCTTCGAACAACAA TAGGGGTTACCGTAGCAAGGCTATTGTTGCTTCCACTACTGGGAATTGGGGTTGTTGCTGTTGCTGACAAATTACAGTTACTGGGACAGGCAGATGATGC CATGTACAGATTTGTGCTGTTTATGCAATACACAACTCCAAGTGCCATTTTATTAGGAGCAATTGCCAGTCTCAGAGGCTATGCAGTGAAGGAGGCTTCT GCTCTTCTCTTCTGGCAACATGTGTTTGCTCTCTTTTCCCTTTCTATATACATAGTTATCTACTTCAAATTGCTTTCCAGTATTTGA
AA sequence Show only first row Show all	>Lus10036000 pacid=23141194 polypeptide=Lus10036000 locus=Lus10036000.g ID=Lus10036000.BGIv1.0 annot-version=v1.0 MTAFGNTGNLPLAIVGSVCHSKDNPFGPHCHSRGVAYVSFSQWVAVILVYTFVYHMMEPPLEYYEIVEDEIEEVGPSEDVSRPLLVEAEWPGMEDKETEH SKSPFIARVFNSISSLSQTNFPDLDMSVETCPTSPRSIRCLAEPRVVRKMRVVAEQTPIQHILQPPTIASLLAIIIGTVPQLRAFVFGNDAPLSFIKDSF EILGGAMVPSVMLVLGGMLAEGPNDSTIGLRTTIGVTVARLLLLPLLGIGVVAVADKLQLLGQADDAMYRFVLFMQYTTPSAILLGAIASLRGYAVKEAS ALLFWQHVFALFSLSIYIVIYFKLLSSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71090			Auxin efflux carrier family pr...		Lus10036000 [exp]	0	1
AT5G49710			unknown protein		Lus10000765 [exp]	1.4	0.9761
AT3G30390			Transmembrane amino acid trans...		Lus10035140 [exp]	2.0	0.9678
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Lus10022727 [exp]	2.4	0.9715
AT3G51730			saposin B domain-containing pr...		Lus10025248 [exp]	6.0	0.9662
AT2G37150			RING/U-box superfamily protein...		Lus10040389 [exp]	7.3	0.9631
AT2G37150			RING/U-box superfamily protein...		Lus10023507 [exp]	7.5	0.9643
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10035873 [exp]	7.9	0.9681
AT1G48300			unknown protein		Lus10038034 [exp]	10.1	0.9515
AT1G58030		CAT2	cationic amino acid transporte...		Lus10001334 [exp]	11.5	0.9588
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Lus10029166 [exp]	11.7	0.9422

Compare expression of checked genes

Lus10036000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.