Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48760 902 / 0 PAT4, DELTA-ADR PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) AT1G60070 110 / 2e-24 Adaptor protein complex AP-1, gamma subunit (.1.2) AT1G31730 102 / 5e-22 Adaptin family protein (.1) AT5G22770 101 / 1e-21 ALPHA-ADR alpha-adaptin (.1.2.3) AT5G22780 100 / 2e-21 Adaptor protein complex AP-2, alpha subunit (.1) AT1G23900 88 / 2e-17 GAMMA-ADAPTIN 1, GAMMA-AD, GAMMA-ADR, GAMMA-ADAPTIN1 gamma-adaptin 1 (.1.2) AT1G23940 63 / 7e-10 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016706 [exp] 1656 / 0 AT1G48760 914 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Lus10035684 [exp] 105 / 6e-23 AT1G31730 1312 / 0.0 Adaptin family protein (.1) Lus10035683 [exp] 105 / 1e-22 AT1G31730 1343 / 0.0 Adaptin family protein (.1) Lus10037272 [exp] 104 / 1e-22 AT1G31730 1341 / 0.0 Adaptin family protein (.1) Lus10037271 [exp] 103 / 3e-22 AT1G31730 1278 / 0.0 Adaptin family protein (.1) Lus10020522 [exp] 97 / 3e-20 AT5G22780 1689 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10005371 [exp] 96 / 6e-20 AT5G22780 1679 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10019520 [exp] 92 / 9e-19 AT5G22780 1672 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Lus10043363 [exp] 90 / 5e-18 AT5G22780 1659 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G045600 [exp] 1127 / 0 AT1G48760 870 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.012G055000 [exp] 1118 / 0 AT1G48760 815 / 0.0 PROTEIN-AFFECTED TRAFFICKING 4, delta-adaptin (.1.2.3) Potri.006G092800 [exp] 118 / 5e-27 AT1G60070 1356 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.016G104700 [exp] 116 / 2e-26 AT1G60070 1329 / 0.0 Adaptor protein complex AP-1, gamma subunit (.1.2) Potri.004G235200 [exp] 101 / 1e-21 AT1G31730 1392 / 0.0 Adaptin family protein (.1) Potri.004G189700 [exp] 100 / 2e-21 AT5G22770 1659 / 0.0 alpha-adaptin (.1.2.3) Potri.009G150300 [exp] 96 / 1e-19 AT5G22780 1640 / 0.0 Adaptor protein complex AP-2, alpha subunit (.1) Potri.006G273300 [exp] 45 / 0.0002 AT4G31480 1657 / 0.0 Coatomer, beta subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region
Representative CDS sequence Show only first row Show all	>Lus10036002 pacid=23140994 polypeptide=Lus10036002 locus=Lus10036002.g ID=Lus10036002.BGIv1.0 annot-version=v1.0 ATGGAGTCGCTTTTTCAGCGTAGTCTCGACGACATCATCAAGGGGCTCCGGCACCAGCAAGCTGGGGACTCAGTTTTCATCTCTAAGGTCCTCGAAGAAA TCCGCCGCGAGATCAAATCCACTGACTTGCACACTAAATCAACCGCCCTTCACAAGCTCACTTATCTTCACTCCATTCATTTCCTCGACATGTCTTGGGC TGCCTTTCATGCCATTGAATGCATTTCCTCCTCCAATTTCTCCCACAAGAAGATCGGATACCTCGCTATTTCCCAGTCCTTCCACGAATCTACCCCTGTC ATCTTGTTGATCACCAACCAGTTGCGCAAGGATCTCAAGTCTAATACAGAGGCCGAGGTCAGTTTAGCCCTAGAATGCCTTTCCAGAACTGGTAACCTTG ATTTATGTAGAGATCTTACTCCTGAAGTCTTCACTTTGATGGCCACTTCTAAACTTGTCGTCAAGAAGAAAGCTATAGGTTTGCTTCTGAGGGTTTTTGG GAAATATCCAGATTCTGTCCGGGTGTGTTTTAAGAGGTTGGTGGAGAGTTTAGAGACTGACGACTCCCCCCCGCAGATTGTGTCCGCTGTTATTGGGGTA TTCTGCGAGCTTGCTTCCAGAGACCCGAGGGCATATCTTCCCTTGGCACCTGAGTTTTATAAGATTTTGGTTAACTCTAGGAATAATTGGGTCTTGATCA AAGTGTTGAAGATTTTCACTAAGTTGGCTCCTCTAGAACCCAGGTTGGCTAACAAGATTGTGGAGCCTATTTGTGAGCTTATGAGGAAGACTGGGGCTAA ATCATTGATGTTTGAGTGTATCAGGACAATCTTGACTAGCTTGACCGACTATGAATCTGCAGTTAGGCTTTCAGCTGGAAGAATTAATGAGCTACTGGTG GATGAGGACCCAAACCTCAGGTATCTTGGATTGCATGCTTTGGCGTTAATTGCACCCAAGCATATATGGGCAGTACTGGAGAACAAGGAGGTTGTAATCA AATCTTTAAGTGATGCAGATCCGAACATCAAACTTGAATCTCTGCGCCTAGTTACGGCAATGATGTCTGACAGTAATGTAGTTGAGATTTGCCGGGTGTT GATGAACTATGCCGCTAAATCTGAGCCCGAGTTTTGCAATCAGATTCTTGGTTCCATTTTGTCGACTTGTTCCCATAACGTGTATGAGATTGTTGTTGAT TTTGATTGGTATGTCTCCCTTCTAGGTGAAATGTCAAGGATTCAACACTGCCAAAAGGGCGAAGAAATTGAAAATCAGCTTATTGACATAGCCATGAGGG TCAAGGATGTTAGACCAGAGCTTGTCCGTGTTGGCCATGATCTTGTAATTGATCCTGCATTACTTGGTAATTCTTTCCTGGACCGGATCTTATCATCTGC TGCTTGGGTGTGTGGGGAGTATGTGGAGTTTAGTAGGAGGCCAGTTGAACTTGTGGAGTCACTGTTACAGCCTCGAACTAGTCTCTTACCTACATCAGTG AGAGCTGTGTATTTGGAGGCAGCTTTTAAAGCATTAATATTTTGTTTTCATTCTTACATACTGAATGCATCTAGCAAAGGAGAATTCTCAGAACTAGCTA CAGAAGAAGTATTTAATCCTCGAGTCTCAGATCATTCAAATGGTGATATTTCTGGTGCAGATGGAGAAAACAGTCAGGCATCTAGATGTAATCTTGTGGA GGAAAAGTATTCGACATCTGATCCCATTCTTTACCTGTTTAACTTGATTGACCTGGCTGTGAGCCCTCTATCAGGTAGCTATGATGTGGAAATACAGGAA AGGACAAGAAACATACTTGGTTTTGTAGAGTTGGTTAGGCCACAACTATCTAATTCTTCAAGTCCAGAAGATGCTGAAGTTAAAGAAGGCAAAGCTTCAA TGATGGTCAGATTATTACATGATACATTCTTGAACGAGTTAGGCCCAATCTCGACAAGTGCTCAGGGGAGAGTTCCCATACCAGATGGACTAGTGCTTCA TGAGAATCTTGCTGATTTGGAAGCAGTATGTGGAAGCAATGAGGTACCACCTGCACCATGTCCTGTTTCTCTGGATAATGAAGGTGGTAGCATCTTCATC GCTGATCACAAAGAAAAATCAGAACTTTCAACAGAGTCCACTTCCTTGCTTGTTGAGCACCGTAAAAGGCATGGATTATACTATCTATCTCCGGAGAAGG ATGAACATGTAGCAAATGATTATCCACCTGCCAATGAGCTCAAATCAGGTATTGGCATTAGTGATGATGCTGAAGATCTGGTTAAGCTTGCACAACAATC ATTTCTACCGAAGAGAAAGTCGAAACAGGTGAAGGCTAGGCCAGTTGTAGTGAAGTTGGATGAAGGAGATACGCATATTACTTCAAGGAAACCTGAAGCT AAGGATGATTCACTATCTGACGCAGTTAGAGATGTTCTTTTAGGTAATGAAGCTGAAGCTGGTTCTTCAAGACAGCAATCGCCTGCTATTACTTCACTAG ATAAGAAAAAAGGGAAAGTAAAAATGAATGCGGAGGGACAAAAGGAAGATTCATCAGAGAAGGTGGGTTCTCAACAACAGATTCCTGCCAAGGACAGAAG TAAAAAGTCAGGGAAGAAGGATGGCGACCACAAGGACAAAGCCGGCGATATAGAAAAGCAAAAGAGAAAACATCGACATGGTAGGCATAAAGCAAGAGCA ACTGCCCAGGTTCCTAGCAACGTGATTGCGCAAACTCCTGTAGTTCCGGATTTGCTTCTATAG
AA sequence Show only first row Show all	>Lus10036002 pacid=23140994 polypeptide=Lus10036002 locus=Lus10036002.g ID=Lus10036002.BGIv1.0 annot-version=v1.0 MESLFQRSLDDIIKGLRHQQAGDSVFISKVLEEIRREIKSTDLHTKSTALHKLTYLHSIHFLDMSWAAFHAIECISSSNFSHKKIGYLAISQSFHESTPV ILLITNQLRKDLKSNTEAEVSLALECLSRTGNLDLCRDLTPEVFTLMATSKLVVKKKAIGLLLRVFGKYPDSVRVCFKRLVESLETDDSPPQIVSAVIGV FCELASRDPRAYLPLAPEFYKILVNSRNNWVLIKVLKIFTKLAPLEPRLANKIVEPICELMRKTGAKSLMFECIRTILTSLTDYESAVRLSAGRINELLV DEDPNLRYLGLHALALIAPKHIWAVLENKEVVIKSLSDADPNIKLESLRLVTAMMSDSNVVEICRVLMNYAAKSEPEFCNQILGSILSTCSHNVYEIVVD FDWYVSLLGEMSRIQHCQKGEEIENQLIDIAMRVKDVRPELVRVGHDLVIDPALLGNSFLDRILSSAAWVCGEYVEFSRRPVELVESLLQPRTSLLPTSV RAVYLEAAFKALIFCFHSYILNASSKGEFSELATEEVFNPRVSDHSNGDISGADGENSQASRCNLVEEKYSTSDPILYLFNLIDLAVSPLSGSYDVEIQE RTRNILGFVELVRPQLSNSSSPEDAEVKEGKASMMVRLLHDTFLNELGPISTSAQGRVPIPDGLVLHENLADLEAVCGSNEVPPAPCPVSLDNEGGSIFI ADHKEKSELSTESTSLLVEHRKRHGLYYLSPEKDEHVANDYPPANELKSGIGISDDAEDLVKLAQQSFLPKRKSKQVKARPVVVKLDEGDTHITSRKPEA KDDSLSDAVRDVLLGNEAEAGSSRQQSPAITSLDKKKGKVKMNAEGQKEDSSEKVGSQQQIPAKDRSKKSGKKDGDHKDKAGDIEKQKRKHRHGRHKARA TAQVPSNVIAQTPVVPDLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Lus10036002 [exp]	0	1
AT2G05170		ATVPS11	vacuolar protein sorting 11 (....		Lus10012332 [exp]	2.0	0.9095
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10036789 [exp]	4.0	0.9193
AT3G56640		SEC15A	exocyst complex component sec1...		Lus10038993 [exp]	4.4	0.8612
AT1G05520			Sec23/Sec24 protein transport ...		Lus10021964 [exp]	5.7	0.8992
AT5G53480			ARM repeat superfamily protein...		Lus10023247 [exp]	6.9	0.9066
AT3G57890			Tubulin binding cofactor C dom...		Lus10023821 [exp]	7.5	0.8689
AT5G47940			unknown protein		Lus10016408 [exp]	8.6	0.8146
AT1G05520			Sec23/Sec24 protein transport ...		Lus10021963 [exp]	11.5	0.8838
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Lus10026627 [exp]	11.7	0.8878
AT1G67680			SRP72 RNA-binding domain (.1)		Lus10006439 [exp]	13.4	0.8626

Compare expression of checked genes

Lus10036002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.