Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18180 359 / 3e-119 Glycosyltransferase family 61 protein (.1) AT3G18170 352 / 1e-117 Glycosyltransferase family 61 protein (.1) AT3G10320 241 / 2e-73 Glycosyltransferase family 61 protein (.1) AT2G41640 241 / 3e-73 Glycosyltransferase family 61 protein (.1.2) AT3G57380 239 / 2e-72 Glycosyltransferase family 61 protein (.1) AT2G03370 197 / 4e-57 Glycosyltransferase family 61 protein (.1) AT2G03360 190 / 1e-54 Glycosyltransferase family 61 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016707 [exp] 985 / 0 AT3G18180 367 / 3e-122 Glycosyltransferase family 61 protein (.1) Lus10032459 [exp] 439 / 4e-148 AT3G18180 283 / 2e-88 Glycosyltransferase family 61 protein (.1) Lus10032460 [exp] 430 / 6e-146 AT3G18180 308 / 2e-100 Glycosyltransferase family 61 protein (.1) Lus10042956 [exp] 400 / 2e-134 AT3G18180 283 / 6e-91 Glycosyltransferase family 61 protein (.1) Lus10042954 [exp] 363 / 1e-122 AT3G18170 266 / 4e-87 Glycosyltransferase family 61 protein (.1) Lus10032457 [exp] 349 / 5e-117 AT3G18180 248 / 1e-78 Glycosyltransferase family 61 protein (.1) Lus10032454 [exp] 275 / 4e-89 AT3G18170 197 / 6e-61 Glycosyltransferase family 61 protein (.1) Lus10035441 [exp] 249 / 5e-76 AT2G41640 560 / 0.0 Glycosyltransferase family 61 protein (.1.2) Lus10031057 [exp] 244 / 6e-74 AT2G41640 543 / 0.0 Glycosyltransferase family 61 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G051500 [exp] 477 / 7e-164 AT3G18170 451 / 1e-155 Glycosyltransferase family 61 protein (.1) Potri.015G042300 [exp] 471 / 2e-161 AT3G18170 438 / 1e-150 Glycosyltransferase family 61 protein (.1) Potri.015G042200 [exp] 467 / 2e-160 AT3G18180 441 / 3e-151 Glycosyltransferase family 61 protein (.1) Potri.016G057000 [exp] 247 / 4e-75 AT2G41640 584 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.006G048500 [exp] 240 / 1e-72 AT2G41640 604 / 0.0 Glycosyltransferase family 61 protein (.1.2) Potri.010G162200 [exp] 195 / 3e-56 AT2G03360 407 / 3e-139 Glycosyltransferase family 61 protein (.1.2) Potri.008G092700 [exp] 188 / 1e-53 AT2G03360 377 / 1e-127 Glycosyltransferase family 61 protein (.1.2) Potri.010G162100 [exp] 181 / 5e-51 AT2G03360 371 / 1e-124 Glycosyltransferase family 61 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04577 [flax] [poplar] DUF563 Protein of unknown function (DUF563)
Representative CDS sequence Show only first row Show all	>Lus10036003 pacid=23141265 polypeptide=Lus10036003 locus=Lus10036003.g ID=Lus10036003.BGIv1.0 annot-version=v1.0 ATGATGATGTATGATAGCTTGCTGGCCAGAAGCTTCAGCAAACATGAGCAGAAGAAGATGCGAGCAGGAGCACTCATCACTTGCCTCCTCATTGTTATCA CTTTTTCTTCCGTTTTCAAGCCTCAATGGCCACCTTTTTCTTCTTCCTTGAAGTTTGGGTGGTCTCCTGGAGTTGCCCACAAGTTGAATCTGATCAATGA TACAGACACCAGCTCTCAAATTCATCTTGAAAATATGAAGAGTACTGACATCATAACCCATTATCCCAACATTCCTACTACATCAATGGAGAACCATACA AGCAGCTTCATCATGCAACACCCGCCTAATGATGGCAGAGTGAGAAGAAAAGATTCTGCCGTTGTCAAAAACACCAACAACTCTGAGCAATTAAGGGAAG AGGTTGTGAAGACACAGAAGCAAATAGTTCGGTCAAGAATAATGTGCCGGACGGGAGGAAGATCAGAGTTCTGTGACATGGAAGGAGATGTAAGGGTTGA TCCCAATTCAGCCACCGTTTACTTTCTTCTTCCATCGAACACGACGGCAGGTCCTCCTCTGACGACGACGCCGTTGAGGATTAGGCCTTACGGACGGAAT GGTGATACGGTTCCTATGGGATTAGTAAGAGAGTGGTCGCTGAAAATGGTGGCAGAGGGTGATGATCATCACTTGCCACATTGTTCTCGACTTCATGATT CGCCGGCACTTCTCTTCTCTCTTGGGGGATTTGCCGGAAACTATTTTCATGCATTTACCGATATCCTCGTCCCACTCTTCGCCACCGCCCGCAGCTTCAA CGGTCAATTTCTGCTCCTCGTCACTGACCATCGACCCTGGCTGCTCTCTAATTTCAGAGTTTTCCTACAGGCACTCTCCAGCTACAACCCGGTGGATATC GACAAAGGTAGGGAAATCCACTGTTTCTCAAGGTTGATTCTAGGTTTGAAAGGTAGACATAACATGGAATTGAGCATCAACCCATCTGAATCTAATTACA CAATAAGAGACCTTAGGAAATTTCTGAGAAACACCTACTCCCTCAAGAGGCCAACGGCAATCAAATTACCAACTAGCCATCACAAAAAATTGATTGTGGT CCCTCGCCTTCTCATCATATCTCGTAACAAGACTCGTGCATTCACCAATGTGAATGAGATCGCAAGGATGGCAAGGAAACTCGGGTACAAGGTAACAGTT GCCGAGCTAGACAGGAACATGTCGAGGTCCGCAGAGCTTATGAATTCGTGTGATGTAGTGATGGGAGTCCACGGAGCGGGGTTGACGAATATGGTGTTTC TTCCGGAGAATGCAGTGCTGATCCAGGTAGTTCCCGTGGCTGCGAATTTTGTTTCGAGAACCTACTTTGAGGAGCCATCCAAGGATATGAATGTGAGGTA TTTGGAGTACAAAATCACAAAGGAAGAGAGCAGTTTGATGGAGCAGTACAAACCTGATGATGTGGTTTTCACCAACCCCTCGTTGTTTATGAAGAAAGGG TGGGATGCATTCAAATCCATTTACTTGGACAACCAAAATGTAAAGCTTGACATCACAAGGTTCCGGCGCACGTTGTTGAAAGCTTTAGAGCTTTTAAAAT AA
AA sequence Show only first row Show all	>Lus10036003 pacid=23141265 polypeptide=Lus10036003 locus=Lus10036003.g ID=Lus10036003.BGIv1.0 annot-version=v1.0 MMMYDSLLARSFSKHEQKKMRAGALITCLLIVITFSSVFKPQWPPFSSSLKFGWSPGVAHKLNLINDTDTSSQIHLENMKSTDIITHYPNIPTTSMENHT SSFIMQHPPNDGRVRRKDSAVVKNTNNSEQLREEVVKTQKQIVRSRIMCRTGGRSEFCDMEGDVRVDPNSATVYFLLPSNTTAGPPLTTTPLRIRPYGRN GDTVPMGLVREWSLKMVAEGDDHHLPHCSRLHDSPALLFSLGGFAGNYFHAFTDILVPLFATARSFNGQFLLLVTDHRPWLLSNFRVFLQALSSYNPVDI DKGREIHCFSRLILGLKGRHNMELSINPSESNYTIRDLRKFLRNTYSLKRPTAIKLPTSHHKKLIVVPRLLIISRNKTRAFTNVNEIARMARKLGYKVTV AELDRNMSRSAELMNSCDVVMGVHGAGLTNMVFLPENAVLIQVVPVAANFVSRTYFEEPSKDMNVRYLEYKITKEESSLMEQYKPDDVVFTNPSLFMKKG WDAFKSIYLDNQNVKLDITRFRRTLLKALELLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18180			Glycosyltransferase family 61 ...		Lus10036003 [exp]	0	1
AT4G11290			Peroxidase superfamily protein...		Lus10027163 [exp]	1.4	0.9562
AT4G30420			nodulin MtN21 /EamA-like trans...		Lus10023211 [exp]	2.2	0.9521
AT2G21100			Disease resistance-responsive ...		Lus10034478 [exp]	2.4	0.9548
AT3G56230			BTB/POZ domain-containing prot...		Lus10010216 [exp]	2.8	0.9540
AT1G02460			Pectin lyase-like superfamily ...		Lus10009994 [exp]	3.0	0.9441
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	3.2	0.9610
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10025729 [exp]	5.1	0.9376
AT4G12010			Disease resistance protein (TI...		Lus10028060 [exp]	5.6	0.9253
AT4G34770			SAUR-like auxin-responsive pro...		Lus10007562 [exp]	6.9	0.9412
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10034032 [exp]	7.3	0.9480

Compare expression of checked genes

Lus10036003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.