Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01340 174 / 2e-54 At17.1 unknown protein AT5G37840 147 / 9e-44 unknown protein AT1G66480 146 / 2e-43 PMI2 plastid movement impaired 2 (.1) AT1G71015 128 / 9e-37 unknown protein AT5G62900 40 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016709 [exp] 267 / 3e-91 AT2G01340 147 / 7e-45 unknown protein Lus10043472 [exp] 166 / 3e-51 AT5G37840 134 / 2e-39 unknown protein Lus10009120 [exp] 129 / 2e-35 AT4G18975 198 / 1e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) Lus10008274 [exp] 45 / 1e-05 AT1G64700 118 / 9e-33 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G128700 [exp] 207 / 2e-67 AT2G01340 206 / 3e-67 unknown protein Potri.010G113800 [exp] 206 / 1e-66 AT2G01340 207 / 1e-67 unknown protein Potri.017G128800 [exp] 179 / 2e-56 AT1G66480 192 / 8e-62 plastid movement impaired 2 (.1) Potri.004G088200 [exp] 171 / 5e-53 AT2G01340 179 / 1e-56 unknown protein Potri.011G153000 [exp] 47 / 3e-06 AT1G64700 160 / 1e-49 unknown protein Potri.001G448500 [exp] 44 / 3e-05 AT1G64700 154 / 3e-47 unknown protein Potri.016G079700 [exp] 43 / 5e-05 AT3G10120 114 / 1e-32 unknown protein Potri.006G213100 [exp] 41 / 0.0002 AT3G10120 122 / 9e-36 unknown protein Potri.002G196900 [exp] 40 / 0.0006 AT4G02090 92 / 3e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036005 pacid=23141103 polypeptide=Lus10036005 locus=Lus10036005.g ID=Lus10036005.BGIv1.0 annot-version=v1.0 ATGGGGAACAGCATCATAGGGGGGGCCAAGTACAGAAGAGCCAAAGTCATGAAACTCGACGGCGAAACCTTCAAGCTCAAAACCCCTGTTCGAGCCGGAG ACGTCTTGAACAACTATCCTGGCCACTGCCTCTTAGAATCCGAATCGGTTAAGCATTACGGTTCCCGAGCTAAGCCGCTTGAACCCAACCAAAATTTACT ACCCAAGAGGCTTTATTTCCTCGTGGAGCTCCCCAACAATAAGGCGGCGGCTGCGTCTGCGGGGCCGTTTGTCGAAAAGACGCCGAGAAGGGTATGGTCG GGCCCCATCAACATGACTGCCAAGGACAGACTGGAGAGCATGATGCTGGCGAGGAGATCTGCGTCAGATCTCTCGATGATCATGAAACCGCCGGCGGCTA CCTCTGTTTCCGGCAGCGTTACCGTGGCGGATGGCGGGGAGGAAGGGTCGTCGACGATGAGGGTAAAGATGAGGATCCCGAGGGCGGAGGTGGAGAGATT AATGAGGGAAAGTAGAGACGAGGCGGAAGCTGGAGCTAGGATTATGGATCTTTACACTGCCGCTGCAGGAAAACGGAATATTAATAGCGGAGGAGAGGCG AGCAGCAGCAGTAATCCTCTTCCTCTTAGTCACGGTGGTGCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACCGCCGCTAGTGGGAACGTCATCAA GTCACGTGAGGTCAGCTACCAATACCCAATTCTAA
AA sequence Show only first row Show all	>Lus10036005 pacid=23141103 polypeptide=Lus10036005 locus=Lus10036005.g ID=Lus10036005.BGIv1.0 annot-version=v1.0 MGNSIIGGAKYRRAKVMKLDGETFKLKTPVRAGDVLNNYPGHCLLESESVKHYGSRAKPLEPNQNLLPKRLYFLVELPNNKAAAASAGPFVEKTPRRVWS GPINMTAKDRLESMMLARRSASDLSMIMKPPAATSVSGSVTVADGGEEGSSTMRVKMRIPRAEVERLMRESRDEAEAGARIMDLYTAAAGKRNINSGGEA SSSSNPLPLSHGGAXXXXXXXXXXXPPLVGTSSSHVRSATNTQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01340		At17.1	unknown protein		Lus10036005 [exp]	0	1
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10017703 [exp]	1.0	0.9926
AT1G47670			Transmembrane amino acid trans...		Lus10003338 [exp]	2.0	0.9905
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041830 [exp]	3.9	0.9907
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10014148 [exp]	4.5	0.9854
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034817 [exp]	5.0	0.9900
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10032192 [exp]	5.8	0.9909
AT1G49860		ATGSTF14	glutathione S-transferase (cla...		Lus10036808 [exp]	6.5	0.9795
AT2G32030			Acyl-CoA N-acyltransferases (N...		Lus10010570 [exp]	7.3	0.9771
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10039746 [exp]	8.4	0.9805
AT2G42360			RING/U-box superfamily protein...		Lus10002194 [exp]	8.5	0.9886

Compare expression of checked genes

Lus10036005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.