Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01660 177 / 4e-53 PDLP6 plasmodesmata-located protein 6 (.1.2) AT5G37660 137 / 1e-37 PDLP7 plasmodesmata-located protein 7 (.1.2) AT1G70690 119 / 1e-30 HWI1, PDLP5 PLASMODESMATA-LOCATED PROTEIN 5, HOPW1-1-INDUCED GENE1, Receptor-like protein kinase-related family protein (.1) AT3G60720 89 / 5e-20 PDLP8 plasmodesmata-located protein 8 (.1) AT1G69940 88 / 4e-19 ATPPME1 Pectin lyase-like superfamily protein (.1) AT5G61680 87 / 5e-19 Pectin lyase-like superfamily protein (.1) AT5G07410 86 / 1e-18 Pectin lyase-like superfamily protein (.1) AT5G07420 79 / 5e-16 Pectin lyase-like superfamily protein (.1) AT5G07430 70 / 4e-13 Pectin lyase-like superfamily protein (.1) AT5G19730 67 / 4e-12 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016710 [exp] 259 / 3e-84 AT2G01660 318 / 1e-108 plasmodesmata-located protein 6 (.1.2) Lus10016711 [exp] 197 / 1e-59 AT1G69940 400 / 4e-139 Pectin lyase-like superfamily protein (.1) Lus10020814 [exp] 126 / 2e-33 AT5G37660 311 / 2e-106 plasmodesmata-located protein 7 (.1.2) Lus10010362 [exp] 89 / 2e-19 AT3G60720 259 / 7e-85 plasmodesmata-located protein 8 (.1) Lus10012942 [exp] 76 / 6e-15 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 73 / 4e-14 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10034893 [exp] 73 / 6e-14 AT5G61680 333 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 72 / 1e-13 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 71 / 2e-13 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G133500 [exp] 179 / 1e-53 AT2G01660 332 / 1e-114 plasmodesmata-located protein 6 (.1.2) Potri.010G108100 [exp] 178 / 2e-53 AT2G01660 265 / 2e-88 plasmodesmata-located protein 6 (.1.2) Potri.017G130800 [exp] 155 / 1e-44 AT5G37660 314 / 1e-107 plasmodesmata-located protein 7 (.1.2) Potri.004G086000 [exp] 155 / 2e-44 AT5G37660 301 / 1e-102 plasmodesmata-located protein 7 (.1.2) Potri.014G067000 [exp] 96 / 3e-22 AT3G60720 306 / 8e-105 plasmodesmata-located protein 8 (.1) Potri.015G110700 [exp] 96 / 5e-22 AT1G69940 393 / 2e-136 Pectin lyase-like superfamily protein (.1) Potri.006G186100 [exp] 88 / 3e-19 AT1G69940 412 / 4e-144 Pectin lyase-like superfamily protein (.1) Potri.006G186000 [exp] 88 / 3e-19 AT1G69940 412 / 4e-144 Pectin lyase-like superfamily protein (.1) Potri.012G113533 [exp] 86 / 2e-18 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G113433 [exp] 86 / 2e-18 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10036006 pacid=23141217 polypeptide=Lus10036006 locus=Lus10036006.g ID=Lus10036006.BGIv1.0 annot-version=v1.0 ATGGAAGCTTCGTCACCGCGCAGGCTAGAAACGAACCTGACTCCACGGGCTACTCATTTGTCCACTGTGACATCAGTGGTCCACTGTGACATCACTGGGG CCGTTCAGAAGTCCTTCTTGGGCCGGGCTTGGAGTAAGATGCCCAAGACCGCTTTTCTCTACTGTAACATTGGCTCCGTCATCTGCCCCTCTGGCTGGTC CGACAATAACAAACCCGAACGTGATGCGACACTGGACTTCCTTGAGTACAAAAACACGGGGCCAGCTGGGATTGCTACAGATCGTGCTAAATTCAGCAAG CAATTAAGCGACGCTGAAGCGCAACATTACCTTTCTCTAGGCTTTATTCAAGGCTCCTCATGCCTCCTTCTCTCTTTACAACAACTTCACTTCTTCTTCT ACCCAATATTCCTCCCCAACCATATACGGCCTTTACCAGTGCCGCGGAGACCTCCCTCCCGCCGACTGCAGCCGCTGCCTCTCCAGGGCAGCCGCTGCAT AGCCAGGGCCGTCACCCAGCTGGGCACCCTCTGCGCCTCCTCGTGCGGAGGAGCGTTGCAGCTGGACGGCTGCCTCATCAAGTACGACAACGTAACCTTC TTGGGCGTCGAGGACAAGACCGTCTTGTTCCGAAAATGCGGCCCCTACGACTACGACTCTAGTAGTAGTAGCAGTACGTTGTTGGCAAGGAGGAACGCTG TGTTGGATTACGTGGCGGCAGCAGGCGGAGGCGGAGGAGATGGGTATAGGGTGGGGGGGTCCGGCGAAATTCATGCGGTGGCGCAGTGCGTGCAGGACTT GTCCCGGAGCGAGTGTCAGGATTGTGTTTCTGAAGCGATTGGGGAGCTCAAGTCCGCCTGTGGAGCCTCCGCCTGGGGTGATATGTTCCTTGGCAAGTGC TACGCGCGATTCTCGGAAGGTGGGGCTCACTCTCGCGGCGGCGGCGGAGGACAAGGTACGAGCAATAATAATGATGAAGAGATAGAGAAGACATTGGCAA TATTAATCGGACTTATCGCCGGGGTTGCCCTGCTCATTGTCTTCCTTTCCTTCCTCAGAAAACTCTGCGAAAGGGGCAAAGGTAAACCCAATCCAACAAC ACCCACTCCTTTCCTTTATAAATGTCGTAAAAGCGTACGCATATAA
AA sequence Show only first row Show all	>Lus10036006 pacid=23141217 polypeptide=Lus10036006 locus=Lus10036006.g ID=Lus10036006.BGIv1.0 annot-version=v1.0 MEASSPRRLETNLTPRATHLSTVTSVVHCDITGAVQKSFLGRAWSKMPKTAFLYCNIGSVICPSGWSDNNKPERDATLDFLEYKNTGPAGIATDRAKFSK QLSDAEAQHYLSLGFIQGSSCLLLSLQQLHFFFYPIFLPNHIRPLPVPRRPPSRRLQPLPLQGSRCIARAVTQLGTLCASSCGGALQLDGCLIKYDNVTF LGVEDKTVLFRKCGPYDYDSSSSSSTLLARRNAVLDYVAAAGGGGGDGYRVGGSGEIHAVAQCVQDLSRSECQDCVSEAIGELKSACGASAWGDMFLGKC YARFSEGGAHSRGGGGGQGTSNNNDEEIEKTLAILIGLIAGVALLIVFLSFLRKLCERGKGKPNPTTPTPFLYKCRKSVRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01660		PDLP6	plasmodesmata-located protein ...		Lus10036006 [exp]	0	1
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Lus10023035 [exp]	1.4	0.9488
AT1G67710	GARP	ARR11	response regulator 11 (.1)		Lus10006446 [exp]	5.5	0.9108
AT4G36520			Chaperone DnaJ-domain superfam...		Lus10007394 [exp]	14.7	0.9014
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029269 [exp]	25.6	0.9069
AT4G29890			choline monooxygenase, putativ...		Lus10032689 [exp]	26.1	0.9057
AT1G69550			disease resistance protein (TI...		Lus10001038 [exp]	26.8	0.9026
AT1G61500			S-locus lectin protein kinase ...		Lus10024081 [exp]	33.2	0.8595
AT3G53400			unknown protein		Lus10026502 [exp]	33.5	0.9044
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10016752 [exp]	40.0	0.8773
AT1G14180			RING/U-box superfamily protein...		Lus10036764 [exp]	42.2	0.9013

Compare expression of checked genes

Lus10036006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.