Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69940 180 / 7e-56 ATPPME1 Pectin lyase-like superfamily protein (.1) AT5G07410 177 / 1e-54 Pectin lyase-like superfamily protein (.1) AT5G61680 171 / 3e-52 Pectin lyase-like superfamily protein (.1) AT5G07430 152 / 8e-45 Pectin lyase-like superfamily protein (.1) AT5G07420 144 / 6e-42 Pectin lyase-like superfamily protein (.1) AT5G47500 87 / 3e-20 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT3G06830 84 / 6e-19 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G05310 82 / 1e-18 Pectin lyase-like superfamily protein (.1) AT5G55590 81 / 4e-18 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT5G19730 81 / 5e-18 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016711 [exp] 343 / 2e-119 AT1G69940 400 / 4e-139 Pectin lyase-like superfamily protein (.1) Lus10034893 [exp] 132 / 2e-37 AT5G61680 333 / 2e-113 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 89 / 5e-21 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10009997 [exp] 88 / 1e-20 AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1) Lus10012942 [exp] 88 / 2e-20 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10004720 [exp] 87 / 4e-20 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 86 / 8e-20 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 86 / 1e-19 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10010470 [exp] 86 / 2e-19 AT1G05310 521 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G114900 [exp] 214 / 6e-69 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G114266 [exp] 214 / 6e-69 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G112800 [exp] 214 / 6e-69 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G113533 [exp] 214 / 6e-69 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.012G113433 [exp] 213 / 2e-68 AT1G69940 416 / 1e-145 Pectin lyase-like superfamily protein (.1) Potri.006G186100 [exp] 202 / 2e-64 AT1G69940 412 / 4e-144 Pectin lyase-like superfamily protein (.1) Potri.006G186000 [exp] 202 / 2e-64 AT1G69940 412 / 4e-144 Pectin lyase-like superfamily protein (.1) Potri.015G110700 [exp] 184 / 2e-57 AT1G69940 393 / 2e-136 Pectin lyase-like superfamily protein (.1) Potri.006G137100 [exp] 139 / 1e-39 AT1G69940 355 / 1e-121 Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 108 / 5e-28 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10036007 pacid=23141185 polypeptide=Lus10036007 locus=Lus10036007.g ID=Lus10036007.BGIv1.0 annot-version=v1.0 ATGGGTATTCGAGGAGGAGATTTCATGTTTATAACAGTAGTGTTAACGTTACTAGCAGCGGGGTTAAACAAGATTAGTGCGGACGACTTGACACCGATCC CAGCTGACAAAGCCCAAGTAGAAGCCTGGTTCAAGGCAAACGTGAAGCCATTAGCAGAGCGCAAGGCGACGTTGAACGCCACACTGCTAGCAGCCGAGGC CAACGCAACAACCATCAAGGTTCGACCCGACGGCAGCGGACAATTCACCACTCTAACCGATGCCATCAACAGCATCCCCAGCGGGAACACCCGGCGTGTC ATCATAGACTTGGGTTCTGGCCTCTACACGGAGAAAGTCATGATCGAGAGATCCAGACCGTTCATTACCCTGATCGGCGATCCAAAGGCCATGCCCATCT TGCAGTTTGGCGGCACGGCTAGAGAATTCGGAACCGTGTACAGCGCCACTCTACAGGTCGAGGCTGATTACTTCGTGGCCACGAACATTATTTTCAAAAA CACGGCGCCTAAGCCCGACGGTACGAAGAAGGGAGAGCAAGCGCTGGCACTGAGGATCGGAGGACACATGGCGACATTCTGA
AA sequence Show only first row Show all	>Lus10036007 pacid=23141185 polypeptide=Lus10036007 locus=Lus10036007.g ID=Lus10036007.BGIv1.0 annot-version=v1.0 MGIRGGDFMFITVVLTLLAAGLNKISADDLTPIPADKAQVEAWFKANVKPLAERKATLNATLLAAEANATTIKVRPDGSGQFTTLTDAINSIPSGNTRRV IIDLGSGLYTEKVMIERSRPFITLIGDPKAMPILQFGGTAREFGTVYSATLQVEADYFVATNIIFKNTAPKPDGTKKGEQALALRIGGHMATF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10036007 [exp]	0	1
					Lus10023004 [exp]	6.9	0.6630
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10006821 [exp]	8.1	0.6890
AT3G18590		AtENODL5	early nodulin-like protein 5 (...		Lus10014880 [exp]	9.2	0.6740
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10000880 [exp]	11.5	0.6747
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Lus10028996 [exp]	15.9	0.6493
AT5G49180			Plant invertase/pectin methyle...		Lus10023775 [exp]	16.7	0.6231
					Lus10019580 [exp]	16.7	0.6601
AT1G53210			sodium/calcium exchanger famil...		Lus10017657 [exp]	19.6	0.6251
AT1G27880			DEAD/DEAH box RNA helicase fam...		Lus10015818 [exp]	23.7	0.5209
					Lus10023005 [exp]	28.6	0.6166

Compare expression of checked genes

Lus10036007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.