Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25120 165 / 1e-44 ATSRS2 ARABIDOPSIS THALIANA SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016712 [exp] 295 / 1e-90 AT4G25120 1282 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G114100 [exp] 189 / 5e-53 AT4G25120 1329 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00580 [flax] [poplar] UvrD-helicase UvrD/REP helicase N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10036008 pacid=23141174 polypeptide=Lus10036008 locus=Lus10036008.g ID=Lus10036008.BGIv1.0 annot-version=v1.0 ATGGTAAACAACATGTTGCGGAATGTTTTGACTATGTCTTCGCTAATCATTTCGTGTTTCCGCCATTGTAGTATTCCCGCCGGCGGATTTCAGAGGGAGA TATCAAACGAAAATGCATATACTGCCGGTACAAAAGTAATCTCTCAAGAGGAAAGATCTCGATCTCGAATCTCGCAAAACTTCAGAGCTGCTAAGGCTCT TCTTGCTCGTAAACGGCCACGCGATGTCGCTTCTCTGCCGTGTCAATTTTCTCCTTACAGAGCCAAGGAGATCAAGGCTGCTGAATCACCAGCTACAGTT ACAGACATCAAAAGAGTCCCTCTCTCAGAAATATCAAACAAGAATTCGTCTCCAAAGAGTGTTAATTTTTACGCCGAATCGACTCCCATTAGCTGTAGCG CAGGAACACAAGCGGAACCAGCCTGTGATGCTAGGGAAATTTGTTTGAGTAAACGTGCATCAGAATGTTTTGTTACTCCAACTAAACAGCTGGATTTTTC TGGCTTGAGCAGTAGTTATTCTTCTACTCCTGACCTACTGGATGATGATGAATTTGATGAATCTGTTCTGGAAGCAATTGATGGAATATGCGAGCAACAT TCTGCTGCAAAAGTAAAGGACAGTCCAACTCCCAGCCAACATGTGGACACTGCCGAGTCCAACAGCAGTGTTTGTTCTGTGTCCGGTGCTGAGAGTAAGC GGCAGAATGTTACGGGAGTTGTTTTGAGCAATGAGGATGACTTTGAATTCAGGATTGGTGATAATAGCAGGCAGGAATGCATAACTGTGCAGTCCATTTT CTGCTTCAATGGAGCTGACACTTCTGGGTTTGATTCATTCCGTCAAGATTTTCCAACTTACAGAGAGATCAGACTCAATAAAAACTATCGCTCTACACGA TTCATTGTTGAGGCTGCTTCATCTCTTATAAAAAATAACGTGAAACGTTGCGAACTGAAAGATGTTCTCACCGACAATTCTTCAGGGTCTAAGGTAACCA TAAAGGAGTGTCAGAATGAGGAATCACAATGTGCATTTGTTGTTGACAAAATACTGGAAACTGTCTCGGATAGCACGTCTGATAAGCCTTCGTTTGGTGA AATAGCCATTCTTTACCGAAGACAGCTGTAG
AA sequence Show only first row Show all	>Lus10036008 pacid=23141174 polypeptide=Lus10036008 locus=Lus10036008.g ID=Lus10036008.BGIv1.0 annot-version=v1.0 MVNNMLRNVLTMSSLIISCFRHCSIPAGGFQREISNENAYTAGTKVISQEERSRSRISQNFRAAKALLARKRPRDVASLPCQFSPYRAKEIKAAESPATV TDIKRVPLSEISNKNSSPKSVNFYAESTPISCSAGTQAEPACDAREICLSKRASECFVTPTKQLDFSGLSSSYSSTPDLLDDDEFDESVLEAIDGICEQH SAAKVKDSPTPSQHVDTAESNSSVCSVSGAESKRQNVTGVVLSNEDDFEFRIGDNSRQECITVQSIFCFNGADTSGFDSFRQDFPTYREIRLNKNYRSTR FIVEAASSLIKNNVKRCELKDVLTDNSSGSKVTIKECQNEESQCAFVVDKILETVSDSTSDKPSFGEIAILYRRQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25120		ATSRS2	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10036008 [exp]	0	1
AT3G16650			Transducin/WD40 repeat-like su...		Lus10001473 [exp]	3.0	0.7177
AT4G12010			Disease resistance protein (TI...		Lus10008320 [exp]	7.2	0.6168
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10006821 [exp]	11.8	0.6744
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10004578 [exp]	17.5	0.6159
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10024728 [exp]	18.1	0.6177
AT5G01750			Protein of unknown function (D...		Lus10007360 [exp]	21.5	0.5854
AT5G61890	AP2_ERF		Integrase-type DNA-binding sup...		Lus10022426 [exp]	23.0	0.6142
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	27.1	0.6030
AT1G10385			Vps51/Vps67 family (components...		Lus10017692 [exp]	28.8	0.5723
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10023810 [exp]	29.3	0.5910

Compare expression of checked genes

Lus10036008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.