Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02390 107 / 1e-23 DAU1 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) AT1G07620 77 / 2e-14 ATOBGM GTP-binding protein Obg/CgtA (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016715 [exp] 1198 / 0 AT5G02390 211 / 1e-57 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10040814 [exp] 85 / 9e-17 AT5G02390 129 / 4e-31 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Lus10028147 [exp] 51 / 3e-06 AT2G45900 224 / 4e-65 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1) Lus10042850 [exp] 50 / 1e-05 AT2G45900 316 / 1e-94 Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G095500 [exp] 129 / 2e-30 AT5G02390 189 / 9e-50 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.001G239500 [exp] 97 / 1e-20 AT5G02390 149 / 6e-37 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.009G030700 [exp] 95 / 1e-19 AT5G02390 99 / 7e-21 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2) Potri.002G160000 [exp] 67 / 5e-11 AT4G00440 351 / 6e-107 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3) Potri.014G084600 [exp] 64 / 4e-10 AT4G00440 395 / 4e-124 Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2), Protein of unknown function (DUF3741) (.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10036009 pacid=23141124 polypeptide=Lus10036009 locus=Lus10036009.g ID=Lus10036009.BGIv1.0 annot-version=v1.0 ATGGACGCGAAATGTACTATAGCTAGGGAGATTGTGGAACTGAAGTCATTTATAGCAACAAAGAAAGTTATTGGGGAGAAACTGAAAATTCAAGAAATGA TGGCAAGAAAAATGCAGCAAAATCAGCAGCAGCAGCAGCAGCAACCCCAGCAACAATTTGCAGGGAGGCATCCAGGATGCATGTGGGGTGTTCTTCATGT TCTAAAATACCAACGTTGGCGTTACATTAAGAAACGCCTTCCTCAATCTCGTCCTTCTTTTTCTCCACGGCATTCTACTTCTACTACTGGTGGGATTTAT GGAGAACCTAGTACGTCTGCAACAAATCAAACAACGATAGAAACTCAATCACTACCTCCAAACAGTAATGCTGCTAATTCAACGGCTTCTAGCTCCGGAG CTGATCTTGACAAGCCTGCCAAGTCGATCAGAAGCTCTGTAAGATCTAGACTGAAATCTCTAATCTCTGATGAACTCTACAGAAAGAAAGGCAATAACCA TCGTCGCACTAACACATGTCCAGTTCCTCAACAACAACAACAACAACAACATAATCCTCATGATGAACAAGAAACACAACAATTAACCTTTGACAGGGTA ACCTTACCATCCCCTTCTGTACCTCGGGTTGAAGACAGTGTCAGCAAAAACCATGATGCCTCCTCTAGTTCACATGAACATGATCAAGAGAACGACTTTA GCAGTAGAAAGGAGCTCTCTGAAGCGCTAGACATGGCATTCACGAACAAAGAATTTATGGCCACAATTCTACAAGACCCACATTCCCATTTTTCTCCTCA ATTCACTACCCACAAGAGATACTCCAAGTCTGTTTCGTTTCCCTCCACAACTCTTAAGAAGGAACCACCACAGAAGCAAGAGGGCATAGGGAAATCCAAG GAAGCAGAAGCATTTGATCCAAAGAAGCTGGGAAGTCATCCACTCCTCAACTCTACATCTTACAAGCGTTCGCACTCGTTGTCAACAATTCCAGCAGACT ACAAACTGGATGGAATCTCCATTTCAACACTTAAGCGATCAGTGGCAGCATCTATTAATGATACCTCACCCTCCATGGTCAATAAGGTAAGTAGTGGCCG AAACAAGACCGCCATGAGGCGCCTGAAAGACCTCAAACAGAAGATCAGACATGTAATTACCATGGAGGCCGTTCTTCATAAGATTCCTCGAGGTGGTGGG AGCTCTCCTGTGTCTGACTTGTCCAAGGATAAGAAAATAGAGGGAGGCAATAATGACATTGTCGCAAGTCCGAGGAAGAGCTATGCCGGAGATTGTTGCA AGTTTGTTTTGGCCAGTAAGACTGAGAATCAAAAGCTTAAGAGAACTTCTTCTCTTCGTGAATCGCTTGATAAGTACTGTCAGTTATATGACACTACTGT CAACAGAGATTCAAAGAAGAATCTAATGGCAGAGGATCCAGCAAACATGGACATAAATGATGAGCAGATAGCCGTGGTAAATGATGACACAACAACCAAT TATGATGTTGAAGAACCAGATGAAAGAAAAGAAGTTTCTCCATCTTCAACTAGTGATGATGTGAGTGAAGAGAACAAGCATGACCTCGAAAAACATAAAA GTCCATTCTCTAATGAGAAATCCAATGAGAAGTTAGTAGATGATGGTATGTTTATTCCTGAAGATACCTTCGTCATACGAGAGGAGGATGCTAACTCTCA CCCACCCTTCTCCACATTCAAAGATTCAGAACAAATTCTGAAGAACCTCATTGCAAACAAGCTTAACTTCCTAGAAGACCATAGAGCGGAATCCATAATT GATGAAATCATAGAAGCGGAAGAAGAGCTTGACAAGAAGAAGAAATTCGAATCCAAGAACAACGCATGTTATGAGGTGATTGAGTTTCAAGTGGATGATT GGAAGGAAAAAGAATATTTTGATTACGTAAAGGGAATACTGGACATATCTGGATTTTGCCGGAAGGAATTTTTGGGAGCATGGCATTCGAACGAGCAGCC ACTAGATCCAGCAGTTTTCTATGGGGCTGGTGGAGACAGTCACTTGGCAATGTTTGACCTCATCAATGAAGTTCTAATGGATATTTATGCAAAGTCGCAT ACTTACTGCCCAAAGCCGCTGTCATGGCTTTCACACATCAAGCCGATGCCAACTGGGTACCATGTTTTGAAGGAGGTTTGGGGGAACGTGAAGTGGAGTT TGAGAGCCATCCCAGATGAGAATGAAGAACATCTGTTAGATTTTTTTGGTGGGTAG
AA sequence Show only first row Show all	>Lus10036009 pacid=23141124 polypeptide=Lus10036009 locus=Lus10036009.g ID=Lus10036009.BGIv1.0 annot-version=v1.0 MDAKCTIAREIVELKSFIATKKVIGEKLKIQEMMARKMQQNQQQQQQQPQQQFAGRHPGCMWGVLHVLKYQRWRYIKKRLPQSRPSFSPRHSTSTTGGIY GEPSTSATNQTTIETQSLPPNSNAANSTASSSGADLDKPAKSIRSSVRSRLKSLISDELYRKKGNNHRRTNTCPVPQQQQQQQHNPHDEQETQQLTFDRV TLPSPSVPRVEDSVSKNHDASSSSHEHDQENDFSSRKELSEALDMAFTNKEFMATILQDPHSHFSPQFTTHKRYSKSVSFPSTTLKKEPPQKQEGIGKSK EAEAFDPKKLGSHPLLNSTSYKRSHSLSTIPADYKLDGISISTLKRSVAASINDTSPSMVNKVSSGRNKTAMRRLKDLKQKIRHVITMEAVLHKIPRGGG SSPVSDLSKDKKIEGGNNDIVASPRKSYAGDCCKFVLASKTENQKLKRTSSLRESLDKYCQLYDTTVNRDSKKNLMAEDPANMDINDEQIAVVNDDTTTN YDVEEPDERKEVSPSSTSDDVSEENKHDLEKHKSPFSNEKSNEKLVDDGMFIPEDTFVIREEDANSHPPFSTFKDSEQILKNLIANKLNFLEDHRAESII DEIIEAEEELDKKKKFESKNNACYEVIEFQVDDWKEKEYFDYVKGILDISGFCRKEFLGAWHSNEQPLDPAVFYGAGGDSHLAMFDLINEVLMDIYAKSH TYCPKPLSWLSHIKPMPTGYHVLKEVWGNVKWSLRAIPDENEEHLLDFFGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10036009 [exp]	0	1
AT1G76140			Prolyl oligopeptidase family p...		Lus10034558 [exp]	1.4	0.9132
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Lus10028201 [exp]	1.4	0.9267
AT3G59000			F-box/RNI-like superfamily pro...		Lus10034559 [exp]	2.2	0.8915
AT2G02000		GAD3	glutamate decarboxylase 3 (.1)		Lus10009116 [exp]	2.4	0.9126
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10014175 [exp]	5.5	0.8902
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10016715 [exp]	5.7	0.9067
AT4G38840			SAUR-like auxin-responsive pro...		Lus10032173 [exp]	6.5	0.8680
					Lus10002080 [exp]	8.4	0.8021
AT5G48840		ATPTS, PANC	ARABIDOPSIS THALIANA PANTOTHEN...		Lus10025932 [exp]	8.8	0.8447
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001010 [exp]	9.5	0.8869

Compare expression of checked genes

Lus10036009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.