Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73960 1432 / 0 TAF2 TBP-associated factor 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016716 [exp] 2521 / 0 AT1G73960 1469 / 0.0 TBP-associated factor 2 (.1.2) Lus10025001 [exp] 49 / 2e-05 AT4G33090 1385 / 0.0 aminopeptidase M1 (.1) Lus10026448 [exp] 48 / 7e-05 AT4G33090 1389 / 0.0 aminopeptidase M1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G050800 [exp] 1774 / 0 AT1G73960 1552 / 0.0 TBP-associated factor 2 (.1.2) Potri.006G224500 [exp] 44 / 0.0008 AT4G33090 1356 / 0.0 aminopeptidase M1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF01433 [flax] [poplar] Peptidase_M1 Peptidase family M1 domain
Representative CDS sequence Show only first row Show all	>Lus10036010 pacid=23140982 polypeptide=Lus10036010 locus=Lus10036010.g ID=Lus10036010.BGIv1.0 annot-version=v1.0 ATGGCAAAGCCGCGAAAGTCGAGAAACGAAGGCGCCAAGCCCGATGATTCCGGAGCTGTTGTTCGTCATCAGAAGCTCTGCTTGTCCATTGATGTCGACA AGCGCCAAATCTACGGTTACACGGAGTTGGAAATAGTTGTTCCTGACATAGGCTTTGTTGGGCTTTATGCCGAGAATTTGGGACTGGAGAGTGTCTTTGT GGATGGAGAGCCTACTGAGTTCGAATACTATCCACATCAGCAAAATGCAGAAGCTGAGAAGAAGTGGAAGAATTCAGTGTCGGATCCTAGCTCTGCTGCT GATGCTGCTGGCGCCTCCTATTTGGGCGCATTGGAGAAAGAACGTGTTCCTAATCTACTTATCAACTGTTGCAAAGCTTTTCGGGCTTCAACTGAACCCG AACAAATTATTTCTGATAATGGGTTACAATGCTCCAGCGAAGCCAAGCAACAGAATGTAAAATTGGTCCGTATCAACTACTGGGTCGAGAAAATGGAGAC AGGTATTCATTTTGATGATAATGTGCTGCACACTCATAATCAGATCAGACGTGGCAGGTGCTGGTTTCCTTGTATGGATGAAGGTTTTCAGCGATGCTGT TATGATCTTGAGTTCACAGTTGCCCTGAATCTTGTTGCTGTCAGTGCAGGAAACTTACTGTACACGGTTCTAAGCGAAGATCAACCTCCTCGGAAGACAT ATGTGTACAGATTAGAGGTTCCTGTAATGGCTCACTGGATTTCGCTGGCGGTTGCACCGTTTGAGATCTTTCCTGATCCTGAAATTGGTCTTGTGTCACA CTTGTGCTTGCCGTCTTGTTTGTCCCAACTACGGAACAGTGTTCGATTTTTTCATAATGCGTTCAAATATTATGAAGACTACCTGGACGCAAAGTTCCCC TTTGGATCTTATACACAGCTTTTTCTTGCTCCTGAGATGGTGATAACCTCATTAAACTTGGGAGCTGCCATGAGTCTCTTTAGTTCACAGCTCCTGTATG ATGAAAAAGTTATCGATCAGACCATAGACACTTGCGTCAAATTATCCTTTTCTCTTGCCAGACAATGGTTTGGCATATATATTGCCCCAGAAGAACCAAG TGATGAGTGGTTGCTGGATGGGCTTGCTGGTTTCCTGACAGATCTGTTCATCAAGAAATTTTTGGGTAATAATGAGGCGAGATACAGACGATACAAGGCA AATTGTGCTATTTGTAAAGCAGAAGATCCCGCTATAACTCTGAGCTCTGCTGCTTCTTGCAAGGATCTTTATGGGACCCATAACATTGGTATATATGGAA AAATACGATCCTGGAAGTCGGTCACTGTCCTGCAAATGCTGGAAAAGCAAATGGGGCCCGAGTCATTCCGCCGAATTTTGCAGAAAGTTGTTTCTCGGGC TGGCGATGCTGTTCCTGTCAGATCTCTAAGTACAAAGGAGTTTCGACACTTCGCAACCAAGGTAGGAAACCTAGAGCGGCCTTTTGTTAAAGAGTTCTTT GCCCGCTGGGTTGGTTCTTGTGGAAGTCCTGTGCTAAGAATTGGATTCTCGTATAACAAAAGAAAAAACATTGTTGAACTGGCTGTGCTGCGTGAGTGCA CAGTTGTTCAAGAATCAAGTACATCAATGCTCAACATTGATGGTGAAAATCGAGATGCTGATCTTGGCTGGCCTGGAATGATGAGTATAAGGATACATGA ATTTGATGGTATGTATGACCATCCAGTTCTTCCTTTATCGGGTGACACGTGGCAGTTGCTGGAGATACCATGTCATTCAAGGGGATCTGGAAGGCGCTTT CAGAAACCTAAAAAGGGTTCAAAACCTGAAGGTTCTGACGAAAATGGTGACATTCCTGCGGTAGAGCGTTCCAGTTCAGAGTCCCCATTTTCCTGGATTA GGGCTGATCCAGAGATGGAGTATCTTGCTGAAATTCATCTTAATCAACCAGTACAGATGTGGATCAACGAATTGGAGAAAGATGAAGATGTTGTTGCTCA GTCACAAGCAATCACTGCACTGTCATCTTTGCCCCAACTTCCCTTCTCAGTTGTAATTGCCCTGAACAATCTCCTCAGCAATTCCAAGGTCTTCTGGAGA GTTCGGATTGAAGCAGCATTTGCATTAGCAAATAGTGCTTGTGAGGAAACTGATTGGGCTGGTTTCCAACATTTGGTGAAATATTATAAAAGCCGCAGGT TTGACGCTACGATTGGGCTTCCCAAGCCAAATGACTTTCACGATTTTCCGGAGTACTTTGTTCTTCAGGCAATTCCTCATGCTGTTTCGATGGTAAGAAC TGCAGACAAGAAAAGCCCAAGGGAAGCCGTTGAGTTTGTTTTGCAGCTTTTGAAGTATAATGATAATGCTGGAAATCCTTATTCGGACGTTTTCTGGCTT GCTGCACTTGTTCAGTCAGTTGGCGAACTTGAATTTGGGCAACAGAGTTTGTGCTGTTTATCATCTTTACTCAAGAGCATCGATCGGTTGTTGCAATATG ACAGACTAATGCCGAGCTACAATGGGATATTGACGGTGAGCTGTATCCAAACCCTATCACAGATAGCGATCAAGCTTTCAGAGTCTATTCATGTCGATCT TGTCCTTGAACTTATCAGACCATTTCGTGAAACTGCAAGTATATGGCAAGTAAGAATTGAAGCGAGCAGAGCACTTCTTGCTTTGGAATTTCACTGCAGA GGCATTGATTCGGCTTTATCGTTAGCTAGAAAATATTTAGAGGAAGAACCATCTTTGAGAGGTCAGACGAAACTCGGTGCCCATGCACTTAGGTTATGCC ACATACGAGATGGATCTAATTCTAACAATAACGTTAACACTGCAACACTAGTTGCTCTGCTTCAACTGCTTGAAGGTCCTATCGGATTCAACAATATACA TCTTCGACATCATGTATTCTGCATTTTACATGTCCTTTCAGGAAGGGAGCCGACACTGTATGGAGTCCCCAGAGAGAAAACATTGTGCGTTGGTGATGCT GAAACTTGCAGCGAACAGAAAAATATATTTGCAGCTTTCATGACTCATAATACAGAGAGGGTGCTGTTGGAAGAGATATCAAAACAGTGTGACACGGATA TCGCAGCAACGTTTGAAGGTTCCAAAGTTGCAGATGCATTATTTAACAATGATGAGGAGCATTTTGATTTGTCTGTTCCAGAGAATCCAAAGGAACCAAA TGTAGTTCACAACAATCAGGAAGAGAAGTTGGAAATGGTTGTTCCGGAAGCTTCAAAGGACGTTGATAGTGTCTCTAAAAATCATGAGCGTAGGAAGTCA GTTGTTAAGATAAGACTGAAAAGGTCCGCAGCCTCTAGTCGGGCAGATACTGCGGATAATCAGACAGTCGAGTTACAGCAAGGTGATCGCCATGAAACTA CGAGTTCCATGTCAGTGGATGCACCGCGGCTAAAGAATTCTGTCGAGGCTGCAAGCATGAGCAACCAGAATCTGGATGAAGTTAACTCGTGTATGGACCG TGGATCCAGAATGACTGCCAGCATTGGGAGTGCTGAGATCATGAGGAAGGAACTACAATGCACTGCTGATTCGAGCAAAGTATCTGTACACTCTCATCAG CCTGATGATACGTGGTCACCTAGTTTTGTTTCAAAGGATAATAATGTGGATGCTGAGGCTCAGAGGTTTGCCAGTCTACAAACCCTCTCGCTTGGAAGAG TTGAAGGAAAGGAGAAGAAGAAAAGGAAGCGGGATGGTGATAAAGATAAAGGGAAAAGAGATGATCCCAAATACTTGGAGCGGAAGCGATTGAAGAAGGA GAGGAAGAAGAAGGAGAAGGAGCTGGCAAAGTGGATGGCTCTGCACGGCGACTCATCAAAGAAGCTCGAGGAATCAGCAGCCAACCACCCCAATGCGAAA ACGTTGAATGTGGAAGGAAGCGTTAAGATGGAGCCCTTACAAGGAGGAGGGACTTCTGCTCTTCAGTCTGCTCCCAGATTTAAGATCAGAATTAAGAGCA AAACATTTAACAACCCTTAA
AA sequence Show only first row Show all	>Lus10036010 pacid=23140982 polypeptide=Lus10036010 locus=Lus10036010.g ID=Lus10036010.BGIv1.0 annot-version=v1.0 MAKPRKSRNEGAKPDDSGAVVRHQKLCLSIDVDKRQIYGYTELEIVVPDIGFVGLYAENLGLESVFVDGEPTEFEYYPHQQNAEAEKKWKNSVSDPSSAA DAAGASYLGALEKERVPNLLINCCKAFRASTEPEQIISDNGLQCSSEAKQQNVKLVRINYWVEKMETGIHFDDNVLHTHNQIRRGRCWFPCMDEGFQRCC YDLEFTVALNLVAVSAGNLLYTVLSEDQPPRKTYVYRLEVPVMAHWISLAVAPFEIFPDPEIGLVSHLCLPSCLSQLRNSVRFFHNAFKYYEDYLDAKFP FGSYTQLFLAPEMVITSLNLGAAMSLFSSQLLYDEKVIDQTIDTCVKLSFSLARQWFGIYIAPEEPSDEWLLDGLAGFLTDLFIKKFLGNNEARYRRYKA NCAICKAEDPAITLSSAASCKDLYGTHNIGIYGKIRSWKSVTVLQMLEKQMGPESFRRILQKVVSRAGDAVPVRSLSTKEFRHFATKVGNLERPFVKEFF ARWVGSCGSPVLRIGFSYNKRKNIVELAVLRECTVVQESSTSMLNIDGENRDADLGWPGMMSIRIHEFDGMYDHPVLPLSGDTWQLLEIPCHSRGSGRRF QKPKKGSKPEGSDENGDIPAVERSSSESPFSWIRADPEMEYLAEIHLNQPVQMWINELEKDEDVVAQSQAITALSSLPQLPFSVVIALNNLLSNSKVFWR VRIEAAFALANSACEETDWAGFQHLVKYYKSRRFDATIGLPKPNDFHDFPEYFVLQAIPHAVSMVRTADKKSPREAVEFVLQLLKYNDNAGNPYSDVFWL AALVQSVGELEFGQQSLCCLSSLLKSIDRLLQYDRLMPSYNGILTVSCIQTLSQIAIKLSESIHVDLVLELIRPFRETASIWQVRIEASRALLALEFHCR GIDSALSLARKYLEEEPSLRGQTKLGAHALRLCHIRDGSNSNNNVNTATLVALLQLLEGPIGFNNIHLRHHVFCILHVLSGREPTLYGVPREKTLCVGDA ETCSEQKNIFAAFMTHNTERVLLEEISKQCDTDIAATFEGSKVADALFNNDEEHFDLSVPENPKEPNVVHNNQEEKLEMVVPEASKDVDSVSKNHERRKS VVKIRLKRSAASSRADTADNQTVELQQGDRHETTSSMSVDAPRLKNSVEAASMSNQNLDEVNSCMDRGSRMTASIGSAEIMRKELQCTADSSKVSVHSHQ PDDTWSPSFVSKDNNVDAEAQRFASLQTLSLGRVEGKEKKKRKRDGDKDKGKRDDPKYLERKRLKKERKKKEKELAKWMALHGDSSKKLEESAANHPNAK TLNVEGSVKMEPLQGGGTSALQSAPRFKIRIKSKTFNNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	0	1
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10016716 [exp]	1.0	0.9494
AT1G15240			Phox-associated domain;Phox-li...		Lus10025785 [exp]	1.4	0.9286
AT3G57570			ARM repeat superfamily protein...		Lus10042364 [exp]	2.0	0.9203
AT5G15270			RNA-binding KH domain-containi...		Lus10005232 [exp]	2.4	0.9237
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014896 [exp]	2.4	0.9195
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Lus10016683 [exp]	2.6	0.9153
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10032785 [exp]	3.0	0.9127
AT5G06120			ARM repeat superfamily protein...		Lus10041603 [exp]	3.9	0.9201
AT1G16800			P-loop containing nucleoside t...		Lus10037303 [exp]	4.0	0.9012
AT2G47980		SCC3, ATSCC3	sister-chromatid cohesion prot...		Lus10008306 [exp]	4.9	0.9139

Compare expression of checked genes

Lus10036010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.