Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23670 853 / 0 ATLCB2, LCB2 long chain base2 (.1.2) AT3G48780 843 / 0 ATSPT1 serine palmitoyltransferase 1 (.1) AT3G48790 533 / 0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G36480 135 / 2e-34 FBR11, EMB2779, ATLCB1 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) AT5G04620 100 / 3e-22 BIO4, ATBIOF biotin 4, biotin F (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016717 [exp] 961 / 0 AT5G23670 885 / 0.0 long chain base2 (.1.2) Lus10013317 [exp] 138 / 3e-35 AT4G36480 774 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Lus10005205 [exp] 127 / 2e-31 AT4G36480 772 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Lus10009024 [exp] 82 / 2e-16 AT5G04620 667 / 0.0 biotin 4, biotin F (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G104500 [exp] 897 / 0 AT5G23670 855 / 0.0 long chain base2 (.1.2) Potri.015G103800 [exp] 835 / 0 AT5G23670 829 / 0.0 long chain base2 (.1.2) Potri.012G043800 [exp] 137 / 3e-35 AT4G36480 738 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Potri.015G034600 [exp] 135 / 3e-34 AT4G36480 728 / 0.0 FUMONISIN B1 RESISTANT 11, EMBRYO DEFECTIVE 2779, long-chain base1 (.1.2) Potri.001G126700 [exp] 78 / 4e-15 AT5G04620 607 / 0.0 biotin 4, biotin F (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10036011 pacid=23141263 polypeptide=Lus10036011 locus=Lus10036011.g ID=Lus10036011.BGIv1.0 annot-version=v1.0 ATGATTACGATCCCCTACTTGACCGCTTTGAGCACCTACTTCAGCTACGGCTTGCTCTTCGCTTTCGGTCAATTGCGTGATTTCTTCCGCAAGATCTTTG ATTGGTGGCGCGACAGCAACCTTGAGGTTCCTTCTCCTGCTTCTCCTTTTTTCTTATTTTTTGGGTTTATCCCGAGTTTCCTTTTTTCGTGGCTCTCATC CGTCGTGGATCTTGCTTTCAAGGGCTACGCACCGATCTGTTTAGGACTTGAAGACTTCTACATTCGACGTTTGTATCTTCGGATTCAGGATTGCTTTGGG CGACCCATATCCAGTGCTCCTGATGCTTGGTTTGATGTCGTCGAACGTTACTCCAATGACAATAACAAGACATTGAAACGAACTACAAAGACAAGCAAGT GCCTTAACTTGGGATCCTACAACTATCTCGGCTTTGCAGCAGCAGATGAATATTGTACTCCACGTGCAATTGAGTCCCTAAAGAAGTTTGCGGCAAGTAC CTGCAGCACTCGCGTTGATGGGGGAACTACGATATTGCACACTGAGTTGGAGGAATGTGTTGCCAAATTTGTTGGAAAGCCAGCTGCTATAGTAACTGGG ATGGGTTATGTGACAAACTCTGCCATCCTCCCTGTCCTGATGGGAAAGGGAGGGCTGATAATTAGTGATTCACTGAACCATAACTCCATCGTCAATGGTG CACGAGGCTCTGGAGCAACAATCCGAGTGTTCCAACATAATACTCCGTCTCATTTGGAGAAAGTTCTGAGAGAACAGATTGCTGAGGGGCAGCCCAGGAC ACGCAGACCTTGGAAGAAGATAATGGTCATTGTTGAAGGTATTTATAGCATGGAAGGAGAACTCTGCAAACTTCCGGAGATTGTTGCTATTTGCAAGAAT TATAAGGCTTATGTGTATCTGGATGAGGCTCATAGCATTGGAGCTGTTGGGAAATCTGGACGAGGTGTCTGTGAACTTTTAGGAGTGGATACTGCTGATG TAGATGTTATGATGGGAACTTTTACAAAATCATTTGGATCTTGCGGTGGTTATATTGCTGGATCCAAGGAACTTGTACAATATCTTAAATACAACTGTCC AGCTCATCTATATGGAACATCGATCTCACCTCCAGCGGCGCAGCAAATTATCTCTTCCATAAAGGTTATTCTTGGAGAAGATGGTTCAAACAGAGGGGCT CAAAAGCTTGTGAAAATTCGTGAAAATAGCAACTTCTTCAGGTCAGAACTGCAGAAGATGGGTTTCGAGGTTCTTGGGGATAACGATTCTCCTGTAATGC CAATAATGCTATACAATCCAGCAAAAATCCCAGCATTTTCCCGCGAGTGTCTAAGGCAGAACGTTGCTGTGGTGACAGTTGCTTTTCCAGCAACCCCTCT GCTATTGGCCAGGGCACGTATATGCATATCCGCTGCTCATACTAAGGAAGATCTTGTTAAGGCCTTGGAGGTTATTAGTCAAGTGGGTGACCTTGTGGGT ATCAAGTACTTCCCTGCTGAACCCAACAAGCAACACCAGGAGCATGGCGCAATCAAGTTGGAGTGA
AA sequence Show only first row Show all	>Lus10036011 pacid=23141263 polypeptide=Lus10036011 locus=Lus10036011.g ID=Lus10036011.BGIv1.0 annot-version=v1.0 MITIPYLTALSTYFSYGLLFAFGQLRDFFRKIFDWWRDSNLEVPSPASPFFLFFGFIPSFLFSWLSSVVDLAFKGYAPICLGLEDFYIRRLYLRIQDCFG RPISSAPDAWFDVVERYSNDNNKTLKRTTKTSKCLNLGSYNYLGFAAADEYCTPRAIESLKKFAASTCSTRVDGGTTILHTELEECVAKFVGKPAAIVTG MGYVTNSAILPVLMGKGGLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEKVLREQIAEGQPRTRRPWKKIMVIVEGIYSMEGELCKLPEIVAICKN YKAYVYLDEAHSIGAVGKSGRGVCELLGVDTADVDVMMGTFTKSFGSCGGYIAGSKELVQYLKYNCPAHLYGTSISPPAAQQIISSIKVILGEDGSNRGA QKLVKIRENSNFFRSELQKMGFEVLGDNDSPVMPIMLYNPAKIPAFSRECLRQNVAVVTVAFPATPLLLARARICISAAHTKEDLVKALEVISQVGDLVG IKYFPAEPNKQHQEHGAIKLE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Lus10036011 [exp]	0	1
AT3G62220			Protein kinase superfamily pro...		Lus10038042 [exp]	1.0	0.9181
AT4G36480		FBR11, EMB2779,...	FUMONISIN B1 RESISTANT 11, EMB...		Lus10005205 [exp]	4.2	0.8775
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Lus10023117 [exp]	6.2	0.8998
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10025136 [exp]	7.5	0.8828
AT3G60800			DHHC-type zinc finger family p...		Lus10024561 [exp]	9.2	0.8720
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10006231 [exp]	9.2	0.8912
AT3G62220			Protein kinase superfamily pro...		Lus10009983 [exp]	12.4	0.8924
AT5G23670		ATLCB2, LCB2	long chain base2 (.1.2)		Lus10016717 [exp]	13.0	0.8575
AT2G05755			Nodulin MtN21 /EamA-like trans...		Lus10030012 [exp]	14.0	0.8289
AT2G17760			Eukaryotic aspartyl protease f...		Lus10028411 [exp]	14.1	0.8562

Compare expression of checked genes

Lus10036011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.